Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2257

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2256 and Dshi_2257 are separated by 1 nucleotidesDshi_2257 and Dshi_2258 are separated by 159 nucleotidesDshi_2258 and Dshi_2259 are separated by 49 nucleotides Dshi_2256: Dshi_2256 - riboflavin biosynthesis protein RibD (RefSeq), at 2,378,215 to 2,379,312 _2256 Dshi_2257: Dshi_2257 - ATP-cone domain protein (RefSeq), at 2,379,314 to 2,379,781 _2257 Dshi_2258: Dshi_2258 - protein of unknown function UPF0047 (RefSeq), at 2,379,941 to 2,380,360 _2258 Dshi_2259: Dshi_2259 - hypothetical protein (RefSeq), at 2,380,410 to 2,380,916 _2259 Position (kb) 2379 2380Strain fitness (log2 ratio) -2 -1 0 1 2at 2379.878 kb on + strandat 2379.878 kb on + strandat 2379.886 kb on - strandat 2379.997 kb on + strand, within Dshi_2258at 2380.105 kb on + strand, within Dshi_2258at 2380.113 kb on - strand, within Dshi_2258at 2380.113 kb on - strand, within Dshi_2258at 2380.113 kb on - strand, within Dshi_2258at 2380.113 kb on - strand, within Dshi_2258at 2380.233 kb on - strand, within Dshi_2258at 2380.235 kb on + strand, within Dshi_2258at 2380.415 kb on - strandat 2380.493 kb on + strand, within Dshi_2259at 2380.508 kb on - strand, within Dshi_2259at 2380.546 kb on + strand, within Dshi_2259at 2380.739 kb on - strand, within Dshi_2259at 2380.742 kb on + strand, within Dshi_2259

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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2,379,878 + +1.3
2,379,878 + -1.2
2,379,886 - -0.4
2,379,997 + Dshi_2258 0.13 +0.1
2,380,105 + Dshi_2258 0.39 -0.2
2,380,113 - Dshi_2258 0.41 -0.6
2,380,113 - Dshi_2258 0.41 +2.6
2,380,113 - Dshi_2258 0.41 -1.5
2,380,113 - Dshi_2258 0.41 -0.2
2,380,233 - Dshi_2258 0.70 -0.7
2,380,235 + Dshi_2258 0.70 +0.2
2,380,415 - +1.7
2,380,493 + Dshi_2259 0.16 -0.7
2,380,508 - Dshi_2259 0.19 -1.4
2,380,546 + Dshi_2259 0.27 -0.1
2,380,739 - Dshi_2259 0.65 -2.2
2,380,742 + Dshi_2259 0.65 -0.8

Or see this region's nucleotide sequence