Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2085

Experiment: m.b. nitrate 300 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrate 300 mM
2,204,559	+		Dshi_2084	0.45	-2.3
2,204,564	+		Dshi_2084	0.45	-1.6
2,204,567	-		Dshi_2084	0.45	+0.4
2,204,596	+		Dshi_2084	0.48	-1.6
2,204,631	-		Dshi_2084	0.51	+1.4
2,204,644	+		Dshi_2084	0.53	-2.4
2,204,665	-		Dshi_2084	0.54	+0.4
2,204,666	-		Dshi_2084	0.55	-0.8
2,204,677	-		Dshi_2084	0.56	-1.9
2,204,727	+		Dshi_2084	0.60	-1.6
2,204,735	-		Dshi_2084	0.61	-1.4
2,204,748	+		Dshi_2084	0.62	+0.2
2,204,756	-		Dshi_2084	0.63	+1.4
2,204,783	-		Dshi_2084	0.65	-2.2
2,204,783	-		Dshi_2084	0.65	-1.1
2,204,856	+		Dshi_2084	0.72	+0.0
2,204,961	+		Dshi_2084	0.82	-0.9
2,204,969	-		Dshi_2084	0.83	-0.6
2,204,969	-		Dshi_2084	0.83	-1.6
2,204,969	-		Dshi_2084	0.83	+0.4
2,204,969	-		Dshi_2084	0.83	+2.0
2,204,989	-		Dshi_2084	0.85	-1.3
2,205,003	+		Dshi_2084	0.86	-1.7
2,205,007	+		Dshi_2084	0.86	-0.5
2,205,014	+		Dshi_2084	0.87	+1.0
2,205,020	-		Dshi_2084	0.88	+0.4
2,205,023	-		Dshi_2084	0.88	+0.1
2,205,024	+		Dshi_2084	0.88	+0.6
2,205,040	+		Dshi_2084	0.89	-0.7
2,205,045	+		Dshi_2084	0.90	-1.6
2,205,080	+				-0.1
2,205,088	-				-0.5
2,205,102	+				-1.1
2,205,102	-				-2.5
2,205,120	+				-2.3
2,205,121	-				-1.6
2,205,128	+				-0.1
2,205,129	+				-2.3
2,205,130	+				+1.4
2,205,137	-				+3.4
2,205,138	-				+0.6
2,205,138	-				-0.5
2,205,138	-				+0.4
2,205,145	-				-0.6
2,205,155	+				-0.2
2,205,155	+				+0.6
2,205,155	+				-2.4
2,205,155	+				-0.8
2,205,155	+				+0.4
2,205,155	+				+0.4
2,205,155	+				+0.5
2,205,155	+				+0.0
2,205,155	+				-1.0
2,205,158	-				-1.0
2,205,163	-				-0.4
2,205,163	-				-2.2
2,205,163	-				+1.4
2,205,163	-				+0.4
2,205,163	-				-1.6
2,205,163	-				-1.6
2,205,174	+				-1.5
2,205,175	+				-0.8
2,205,183	-				+2.0
2,205,184	+				-0.7
2,205,186	+				+0.0
2,205,192	-				-0.6
2,205,204	+				+0.1
2,205,220	+				-0.3
2,205,248	+				-0.8
2,205,290	+				-2.4
2,205,290	+				-2.2
2,205,292	+				+0.1
2,205,298	-				-0.9
2,205,300	-				-1.6
2,205,300	-				-0.0
2,205,300	-				-0.0
2,205,300	-				-1.3
2,205,318	+				+1.4
2,205,326	+				-2.6
2,205,326	+				+0.4
2,205,326	-				+0.4
2,205,334	-				+0.7
2,205,334	-				+0.1
2,205,334	-				-1.3
2,205,334	-				-1.0
2,205,334	-				+1.7
2,205,334	-				-1.1
2,205,334	-				+1.7
2,205,334	-				+3.0
2,205,334	-				-2.6
2,205,348	+				+0.2
2,205,349	+				-0.2
2,205,349	+				-0.6
2,205,349	+				+1.4
2,205,349	+				-0.2
2,205,357	-				-0.4
2,205,357	-				-3.1
2,205,357	-				+0.0
2,205,357	-				-0.4
2,205,357	-				+0.4
2,205,359	+				-0.3
2,205,374	-				+0.4
2,205,428	+				-0.3
2,205,428	+				+3.0
2,205,436	-				-1.1
2,205,457	+				+0.4
2,205,457	+				-0.8
2,205,460	-				-1.4
2,205,460	-				+0.4
2,205,462	+				-1.7
2,205,462	-				+2.1
2,205,465	+				+0.4
2,205,465	-				+0.4
2,205,465	-				+0.4
2,205,465	-				+0.4
2,205,465	-				-0.4
2,205,469	+				+0.4
2,205,469	+				+0.4
2,205,469	+				-0.0
2,205,469	+				+0.4
2,205,469	+				-1.5
2,205,475	+				-0.4
2,205,475	+				+2.0
2,205,475	+				-1.2
2,205,475	+				+1.6
2,205,475	+				+1.0
2,205,475	+				-2.9
2,205,475	+				-1.3
2,205,475	+				-0.9
2,205,475	+				-2.1
2,205,475	+				-0.3
2,205,475	+				+0.6
2,205,475	+				-0.8
2,205,475	+				-1.9
2,205,475	+				+1.8
2,205,475	+				+2.0
2,205,475	+				-0.6
2,205,475	+				+0.5
2,205,475	+				+0.4
2,205,475	+				-3.2
2,205,475	+				+0.6
2,205,475	+				+0.4
2,205,477	-				+0.9
2,205,477	-				-1.4
2,205,480	+				+2.0
2,205,483	-				+1.7
2,205,483	-				-2.2
2,205,483	-				+0.7
2,205,483	-				-2.1
2,205,483	-				-0.7
2,205,483	-				-0.0
2,205,483	-				+0.0
2,205,483	-				+0.7
2,205,483	-				-2.6
2,205,483	-				-0.6
2,205,483	-				-0.0
2,205,483	-				+0.4
2,205,483	-				+0.4
2,205,483	-				-0.7
2,205,483	-				+0.4
2,205,483	-				-1.6
2,205,483	-				+1.2
2,205,483	-				+1.0
2,205,483	-				-0.4
2,205,483	-				-1.9
2,205,483	-				+0.1
2,205,483	-				-3.1
2,205,483	-				-0.4
2,205,483	-				-0.3
2,205,483	-				+0.4
2,205,483	-				-0.7
2,205,483	-				+0.2
2,205,483	-				+0.4
2,205,483	-				+3.1
2,205,483	-				-1.9
2,205,483	-				-1.4
2,205,483	-				+2.0
2,205,483	-				-1.3
2,205,524	-				+0.2
2,205,529	+				-0.8
2,205,531	+				+0.4
2,205,542	+				-2.6
2,205,553	-				-0.2
2,205,554	-				-1.2
2,205,560	+				+2.4
2,205,570	+				-1.2
2,205,570	+				-0.6
2,205,598	+				-0.8
2,205,616	+				-2.6
2,205,616	+				-0.9
2,205,616	-				+3.4
2,205,631	-				-1.2
2,205,634	-		Dshi_2085	0.10	-1.3
2,205,644	-		Dshi_2085	0.11	+0.4
2,205,666	-		Dshi_2085	0.14	-0.4
2,205,725	-		Dshi_2085	0.22	-1.4
2,205,736	+		Dshi_2085	0.24	+3.4
2,205,750	+		Dshi_2085	0.25	-2.1
2,205,769	+		Dshi_2085	0.28	+0.6
2,205,793	+		Dshi_2085	0.31	-0.4
2,205,800	-		Dshi_2085	0.32	-0.9
2,205,808	-		Dshi_2085	0.33	-3.8
2,205,811	+		Dshi_2085	0.34	-0.1
2,205,819	-		Dshi_2085	0.35	+1.2
2,205,839	+		Dshi_2085	0.37	-0.6
2,205,870	-		Dshi_2085	0.41	-0.9
2,205,891	+		Dshi_2085	0.44	+1.2
2,205,945	+		Dshi_2085	0.51	+2.5
2,205,953	-		Dshi_2085	0.53	+0.4
2,206,020	+		Dshi_2085	0.61	+0.2
2,206,028	+		Dshi_2085	0.63	+0.9
2,206,048	+		Dshi_2085	0.65	+0.6
2,206,050	-		Dshi_2085	0.65	-1.9
2,206,062	+		Dshi_2085	0.67	+0.4
2,206,080	-		Dshi_2085	0.69	-0.6
2,206,118	+		Dshi_2085	0.75	+0.4
2,206,125	+		Dshi_2085	0.75	+0.4
2,206,126	-		Dshi_2085	0.76	-0.4
2,206,133	+		Dshi_2085	0.77	-1.6
2,206,133	-		Dshi_2085	0.77	+1.6
2,206,145	+		Dshi_2085	0.78	+0.4
2,206,168	-		Dshi_2085	0.81	-1.4
2,206,223	-		Dshi_2085	0.89	-0.3
2,206,251	+				+0.7
2,206,262	+				+1.2
2,206,293	+				-1.0
2,206,293	+				-2.2
2,206,316	+				-0.3
2,206,328	+				-1.5
2,206,336	-				+0.8
2,206,341	+				-0.3
2,206,341	+				-2.1
2,206,346	-				+0.8
2,206,349	-				-1.2
2,206,349	-				-0.4
2,206,349	-				-1.0
2,206,363	+				+3.0
2,206,366	+				-0.4
2,206,366	+				+0.9
2,206,374	-				-2.2
2,206,374	-				-1.1
2,206,416	+				+0.7
2,206,416	+				-0.8
2,206,441	-				+1.4
2,206,490	+				+0.4
2,206,500	+				-0.6
2,206,500	+				-1.2
2,206,500	-				-3.1
2,206,501	+				+1.0
2,206,501	+				-2.5
2,206,501	+				+4.2
2,206,501	+				-0.4
2,206,501	+				+1.4
2,206,501	+				-0.4
2,206,501	+				+0.4
2,206,509	-				-0.3
2,206,509	-				-1.0
2,206,509	-				-0.6
2,206,509	-				-0.6
2,206,520	-				+0.4
2,206,525	-				+0.2
2,206,525	-				+0.4
2,206,535	-				-0.7
2,206,535	-				-0.6
2,206,543	+				-0.9
2,206,550	+				-1.0
2,206,550	+				-0.4
2,206,550	+				+0.1
2,206,550	-				-0.3
2,206,551	-				+0.4
2,206,555	+				+0.4
2,206,558	-				-1.0
2,206,558	-				-0.6
2,206,560	+				+1.0
2,206,563	-				-0.2
2,206,565	+				+1.4
2,206,566	-				+0.1
2,206,569	+				-1.9
2,206,570	+				-0.9
2,206,573	-				-3.3
2,206,573	-				-0.9
2,206,574	+				-2.2
2,206,577	-				-1.2
2,206,579	+				-0.2
2,206,582	-				+1.2
2,206,582	-				+0.4
2,206,584	+				-0.9
2,206,592	-				+1.7
2,206,592	-				-2.3
2,206,597	-				-1.2
2,206,602	-				-2.4
2,206,637	+				-2.6
2,206,638	+				-0.8
2,206,645	-				-1.6
2,206,646	-				-1.8
2,206,648	+				-1.0
2,206,648	+				+1.7
2,206,648	+				+1.0
2,206,648	+				+0.4
2,206,648	+				-1.4
2,206,648	+				-0.4
2,206,648	+				-0.5
2,206,648	+				+0.0
2,206,656	-				+0.6
2,206,656	-				+2.4
2,206,656	-				-0.4
2,206,656	-				+0.4
2,206,656	-				+1.0
2,206,659	+				+2.7
2,206,665	+				+0.4
2,206,666	+				-0.3
2,206,666	+				-1.2
2,206,673	-				-0.7
2,206,673	-				+0.4
2,206,674	-				+1.1
2,206,678	-				-2.1
2,206,678	-				-0.8
2,206,695	+				-1.9
2,206,695	+				-1.2
2,206,695	+				+3.5
2,206,703	-				-1.0
2,206,716	+				+2.0
2,206,737	+				-1.7
2,206,745	+				-0.6
2,206,745	+				-1.7
2,206,745	+				+1.4
2,206,747	+				+0.4
2,206,747	+				-0.6
2,206,747	+				-1.2
2,206,753	-				-1.9
2,206,753	-				-1.9
2,206,755	-				-2.1
2,206,755	-				-0.5
2,206,794	-				-0.3
2,206,796	+				-0.2
2,206,796	+				-1.2
2,206,796	+				-1.9
2,206,814	-				-0.6
2,206,819	-				-0.6
2,206,819	-				+0.2
2,206,822	-				+0.4
2,206,824	-				-3.5
2,206,824	-				-1.9
2,206,824	-				-1.6
2,206,826	+				+0.4
2,206,850	-				-0.9
2,206,854	-				-0.8
2,206,865	+				+0.4
2,206,865	+				-0.8
2,206,867	+				+1.0
2,206,868	-				-2.6
2,206,873	-				-2.2
2,206,873	-				+1.4
2,206,873	-				+0.4
2,206,873	-				-0.4
2,206,873	-				-0.2
2,206,873	-				-0.0
2,206,873	-				-1.5
2,206,875	-				+3.7
2,206,878	+				+0.4
2,206,878	+				-2.5
2,206,878	+				-2.1
2,206,878	+				+0.2
2,206,878	+				-2.2
2,206,878	+				-0.3
2,206,878	+				-0.5
2,206,878	+				-1.1
2,206,878	+				-1.9
2,206,878	+				+2.0
2,206,878	+				-3.1
2,206,878	+				-0.4
2,206,878	+				-2.8
2,206,878	+				-1.9
2,206,881	+				-0.3
2,206,881	+				-0.7
2,206,881	+				-0.6
2,206,881	+				-1.8
2,206,881	+				-0.6
2,206,883	+				-0.2
2,206,886	-				+0.4
2,206,886	-				-0.6
2,206,886	-				-0.3
2,206,886	-				+0.9
2,206,886	-				+2.0
2,206,886	-				+0.5
2,206,886	-				-0.7
2,206,886	-				-1.4
2,206,886	-				-0.1
2,206,886	-				+0.6
2,206,886	-				-3.3
2,206,886	-				-0.3
2,206,886	-				+0.3
2,206,886	-				-0.6
2,206,886	-				-1.4
2,206,886	-				-2.8
2,206,889	-				-1.6
2,206,889	-				+0.4
2,206,889	-				-0.6
2,206,891	-				+0.4
2,206,900	-				-0.9
2,206,908	-				-0.0
2,206,910	+				-2.2
2,206,912	-				-1.6
2,206,915	+				+0.1
2,206,916	+				+3.8
2,206,923	-				-0.6
2,206,923	-				-2.8
2,206,923	-				-1.4
2,206,923	-				+1.0
2,206,925	+				-1.2
2,206,932	+				-0.8
2,206,932	+				-0.8
2,206,932	+				-0.8
2,206,938	+				-1.4
2,206,939	+				-0.4
2,206,940	-				+0.8
2,206,940	-				-0.6
2,206,951	-				+3.2
2,206,956	-				-2.8
2,206,961	-				-0.2
2,206,966	-				+2.2
2,206,966	-				-2.4
2,206,966	-				+0.8
2,206,995	-				-1.2
2,206,995	-				-1.3
2,206,995	-				-0.0
2,207,017	+				+0.1
2,207,025	-				+0.2
2,207,036	+				-0.6
2,207,042	-				-0.6
2,207,049	-				-0.6
2,207,056	-				+0.4
2,207,169	-		Dshi_2086	0.13	-0.6
2,207,190	+		Dshi_2086	0.13	+3.0
2,207,191	+		Dshi_2086	0.13	+2.9
2,207,196	+		Dshi_2086	0.14	-1.4
2,207,205	-		Dshi_2086	0.14	-1.8
2,207,217	+		Dshi_2086	0.15	+0.5
2,207,219	-		Dshi_2086	0.15	+1.4
2,207,233	-		Dshi_2086	0.15	+0.8