Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1797

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1796 and Dshi_1797 are separated by 126 nucleotidesDshi_1797 and Dshi_1798 are separated by 183 nucleotidesDshi_1798 and Dshi_1799 overlap by 4 nucleotides Dshi_1796: Dshi_1796 - anthranilate synthase component I (RefSeq), at 1,867,111 to 1,868,640 _1796 Dshi_1797: Dshi_1797 - protein of unknown function DUF610, YibQ (RefSeq), at 1,868,767 to 1,870,593 _1797 Dshi_1798: Dshi_1798 - glutamine amidotransferase of anthranilate synthase (RefSeq), at 1,870,777 to 1,871,382 _1798 Dshi_1799: Dshi_1799 - anthranilate phosphoribosyltransferase (RefSeq), at 1,871,379 to 1,872,398 _1799 Position (kb) 1868 1869 1870 1871Strain fitness (log2 ratio) -3 -2 -1 0 1at 1869.102 kb on + strandat 1869.321 kb on + strand, within Dshi_1797at 1869.321 kb on - strand, within Dshi_1797at 1869.347 kb on - strand, within Dshi_1797at 1869.913 kb on - strand, within Dshi_1797at 1870.344 kb on - strand, within Dshi_1797at 1870.559 kb on + strandat 1870.567 kb on - strandat 1870.576 kb on + strandat 1870.582 kb on + strandat 1870.599 kb on + strandat 1870.720 kb on + strandat 1870.720 kb on + strandat 1870.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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1,869,102 + +0.3
1,869,321 + Dshi_1797 0.30 +0.3
1,869,321 - Dshi_1797 0.30 -1.5
1,869,347 - Dshi_1797 0.32 -1.1
1,869,913 - Dshi_1797 0.63 +0.3
1,870,344 - Dshi_1797 0.86 -1.7
1,870,559 + -2.9
1,870,567 - -0.3
1,870,576 + -0.3
1,870,582 + +0.6
1,870,599 + -1.3
1,870,720 + +1.3
1,870,720 + +0.5
1,870,728 - +1.3

Or see this region's nucleotide sequence