Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1760

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1759 and Dshi_1760 are separated by 36 nucleotidesDshi_1760 and Dshi_1761 overlap by 1 nucleotidesDshi_1761 and Dshi_1762 are separated by 58 nucleotides Dshi_1759: Dshi_1759 - N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq), at 1,822,376 to 1,823,401 _1759 Dshi_1760: Dshi_1760 - glutamate racemase (RefSeq), at 1,823,438 to 1,824,259 _1760 Dshi_1761: Dshi_1761 - phospholipid/glycerol acyltransferase (RefSeq), at 1,824,259 to 1,825,137 _1761 Dshi_1762: Dshi_1762 - pyruvate ferredoxin/flavodoxin oxidoreductase (RefSeq), at 1,825,196 to 1,828,603 _1762 Position (kb) 1823 1824 1825Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1823.498 kb on - strandat 1823.796 kb on + strand, within Dshi_1760at 1824.543 kb on - strand, within Dshi_1761at 1824.637 kb on - strand, within Dshi_1761at 1824.743 kb on - strand, within Dshi_1761at 1824.797 kb on + strand, within Dshi_1761at 1824.833 kb on + strand, within Dshi_1761at 1824.843 kb on + strand, within Dshi_1761at 1824.871 kb on - strand, within Dshi_1761at 1824.871 kb on - strand, within Dshi_1761at 1824.920 kb on - strand, within Dshi_1761at 1824.933 kb on + strand, within Dshi_1761at 1824.941 kb on - strand, within Dshi_1761at 1824.941 kb on - strand, within Dshi_1761at 1825.172 kb on - strandat 1825.172 kb on - strandat 1825.173 kb on - strandat 1825.247 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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1,823,498 - -0.7
1,823,796 + Dshi_1760 0.44 -0.6
1,824,543 - Dshi_1761 0.32 +1.8
1,824,637 - Dshi_1761 0.43 -0.7
1,824,743 - Dshi_1761 0.55 +0.6
1,824,797 + Dshi_1761 0.61 +0.3
1,824,833 + Dshi_1761 0.65 -1.5
1,824,843 + Dshi_1761 0.66 +1.8
1,824,871 - Dshi_1761 0.70 -1.6
1,824,871 - Dshi_1761 0.70 -2.1
1,824,920 - Dshi_1761 0.75 +2.3
1,824,933 + Dshi_1761 0.77 +0.7
1,824,941 - Dshi_1761 0.78 +2.8
1,824,941 - Dshi_1761 0.78 -1.9
1,825,172 - -1.3
1,825,172 - +0.4
1,825,173 - -0.3
1,825,247 - +0.1

Or see this region's nucleotide sequence