Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1723 and Dshi_1724 are separated by 343 nucleotides Dshi_1724 and Dshi_1725 overlap by 1 nucleotides Dshi_1725 and Dshi_1726 are separated by 22 nucleotides
Dshi_1723: Dshi_1723 - 2-deoxycytidine 5-triphosphate deaminase (RefSeq), at 1,789,628 to 1,790,722
_1723
Dshi_1724: Dshi_1724 - segregation and condensation protein B (RefSeq), at 1,791,066 to 1,791,755
_1724
Dshi_1725: Dshi_1725 - chromosome segregation and condensation protein ScpA (RefSeq), at 1,791,755 to 1,792,549
_1725
Dshi_1726: Dshi_1726 - Beta-N-acetylhexosaminidase (RefSeq), at 1,792,572 to 1,793,558
_1726
Position (kb) 1791
1792 Strain fitness (log2 ratio) -2
-1
0
1 at 1790.087 kb on + strand, within Dshi_1723 at 1790.417 kb on + strand, within Dshi_1723 at 1790.650 kb on + strand at 1790.691 kb on + strand at 1790.834 kb on - strand at 1790.944 kb on + strand at 1791.022 kb on + strand at 1791.794 kb on - strand at 1792.108 kb on - strand, within Dshi_1725 at 1792.396 kb on - strand, within Dshi_1725 at 1792.647 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 1,790,087 + Dshi_1723 0.42 -0.7 1,790,417 + Dshi_1723 0.72 -1.3 1,790,650 + +0.3 1,790,691 + +0.1 1,790,834 - -1.7 1,790,944 + -0.6 1,791,022 + -0.5 1,791,794 - -2.7 1,792,108 - Dshi_1725 0.44 +0.3 1,792,396 - Dshi_1725 0.81 -0.7 1,792,647 - -0.5
Or see this region's nucleotide sequence