Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1633 and Dshi_1634 are separated by 171 nucleotides Dshi_1634 and Dshi_1635 are separated by 2 nucleotides Dshi_1635 and Dshi_1636 are separated by 85 nucleotides Dshi_1636 and Dshi_1637 are separated by 145 nucleotides
Dshi_1633: Dshi_1633 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 1,697,195 to 1,697,683
_1633
Dshi_1634: Dshi_1634 - hypothetical protein (RefSeq), at 1,697,855 to 1,698,508
_1634
Dshi_1635: Dshi_1635 - hypothetical protein (RefSeq), at 1,698,511 to 1,698,726
_1635
Dshi_1636: Dshi_1636 - protein of unknown function DUF125 transmembrane (RefSeq), at 1,698,812 to 1,699,540
_1636
Dshi_1637: Dshi_1637 - protein of unknown function DUF161 (RefSeq), at 1,699,686 to 1,700,312
_1637
Position (kb)
1698
1699 Strain fitness (log2 ratio)
-2
-1
0
1 at 1697.695 kb on - strand at 1698.486 kb on + strand at 1698.660 kb on - strand, within Dshi_1635 at 1698.735 kb on - strand at 1698.905 kb on + strand, within Dshi_1636 at 1698.913 kb on - strand, within Dshi_1636 at 1698.947 kb on + strand, within Dshi_1636 at 1699.280 kb on - strand, within Dshi_1636 at 1699.353 kb on + strand, within Dshi_1636 at 1699.366 kb on - strand, within Dshi_1636 at 1699.403 kb on - strand, within Dshi_1636 at 1699.435 kb on + strand, within Dshi_1636 at 1699.474 kb on - strand at 1699.499 kb on + strand at 1699.548 kb on + strand at 1699.548 kb on + strand at 1699.556 kb on - strand at 1699.622 kb on + strand at 1699.628 kb on + strand at 1699.672 kb on + strand at 1699.680 kb on - strand at 1699.680 kb on - strand at 1699.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 1,697,695 - -1.5 1,698,486 + +0.1 1,698,660 - Dshi_1635 0.69 -1.6 1,698,735 - +0.0 1,698,905 + Dshi_1636 0.13 -0.2 1,698,913 - Dshi_1636 0.14 +0.5 1,698,947 + Dshi_1636 0.19 -0.4 1,699,280 - Dshi_1636 0.64 +1.2 1,699,353 + Dshi_1636 0.74 +0.5 1,699,366 - Dshi_1636 0.76 +0.1 1,699,403 - Dshi_1636 0.81 +0.5 1,699,435 + Dshi_1636 0.85 +1.1 1,699,474 - +0.6 1,699,499 + +0.9 1,699,548 + -0.3 1,699,548 + -1.8 1,699,556 - -0.3 1,699,622 + -0.0 1,699,628 + -0.6 1,699,672 + +0.8 1,699,680 - +0.4 1,699,680 - -0.3 1,699,680 - -0.1
Or see this region's nucleotide sequence