Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1635

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1633 and Dshi_1634 are separated by 171 nucleotidesDshi_1634 and Dshi_1635 are separated by 2 nucleotidesDshi_1635 and Dshi_1636 are separated by 85 nucleotidesDshi_1636 and Dshi_1637 are separated by 145 nucleotides Dshi_1633: Dshi_1633 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 1,697,195 to 1,697,683 _1633 Dshi_1634: Dshi_1634 - hypothetical protein (RefSeq), at 1,697,855 to 1,698,508 _1634 Dshi_1635: Dshi_1635 - hypothetical protein (RefSeq), at 1,698,511 to 1,698,726 _1635 Dshi_1636: Dshi_1636 - protein of unknown function DUF125 transmembrane (RefSeq), at 1,698,812 to 1,699,540 _1636 Dshi_1637: Dshi_1637 - protein of unknown function DUF161 (RefSeq), at 1,699,686 to 1,700,312 _1637 Position (kb) 1698 1699Strain fitness (log2 ratio) -2 -1 0 1at 1697.695 kb on - strandat 1698.486 kb on + strandat 1698.660 kb on - strand, within Dshi_1635at 1698.735 kb on - strandat 1698.905 kb on + strand, within Dshi_1636at 1698.913 kb on - strand, within Dshi_1636at 1698.947 kb on + strand, within Dshi_1636at 1699.280 kb on - strand, within Dshi_1636at 1699.353 kb on + strand, within Dshi_1636at 1699.366 kb on - strand, within Dshi_1636at 1699.403 kb on - strand, within Dshi_1636at 1699.435 kb on + strand, within Dshi_1636at 1699.474 kb on - strandat 1699.499 kb on + strandat 1699.548 kb on + strandat 1699.548 kb on + strandat 1699.556 kb on - strandat 1699.622 kb on + strandat 1699.628 kb on + strandat 1699.672 kb on + strandat 1699.680 kb on - strandat 1699.680 kb on - strandat 1699.680 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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1,697,695 - -1.5
1,698,486 + +0.1
1,698,660 - Dshi_1635 0.69 -1.6
1,698,735 - +0.0
1,698,905 + Dshi_1636 0.13 -0.2
1,698,913 - Dshi_1636 0.14 +0.5
1,698,947 + Dshi_1636 0.19 -0.4
1,699,280 - Dshi_1636 0.64 +1.2
1,699,353 + Dshi_1636 0.74 +0.5
1,699,366 - Dshi_1636 0.76 +0.1
1,699,403 - Dshi_1636 0.81 +0.5
1,699,435 + Dshi_1636 0.85 +1.1
1,699,474 - +0.6
1,699,499 + +0.9
1,699,548 + -0.3
1,699,548 + -1.8
1,699,556 - -0.3
1,699,622 + -0.0
1,699,628 + -0.6
1,699,672 + +0.8
1,699,680 - +0.4
1,699,680 - -0.3
1,699,680 - -0.1

Or see this region's nucleotide sequence