Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1567

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1566 and Dshi_1567 are separated by 41 nucleotidesDshi_1567 and Dshi_1568 are separated by 80 nucleotides Dshi_1566: Dshi_1566 - GTP-binding protein HSR1-related (RefSeq), at 1,631,386 to 1,632,633 _1566 Dshi_1567: Dshi_1567 - RNA chaperone Hfq (RefSeq), at 1,632,675 to 1,632,953 _1567 Dshi_1568: Dshi_1568 - cation transporter (RefSeq), at 1,633,034 to 1,634,542 _1568 Position (kb) 1632 1633Strain fitness (log2 ratio) -2 -1 0 1at 1631.696 kb on - strand, within Dshi_1566at 1631.913 kb on + strand, within Dshi_1566at 1631.921 kb on - strand, within Dshi_1566at 1632.241 kb on - strand, within Dshi_1566at 1632.248 kb on + strand, within Dshi_1566at 1632.279 kb on + strand, within Dshi_1566at 1632.289 kb on + strand, within Dshi_1566at 1632.498 kb on + strand, within Dshi_1566at 1632.630 kb on + strandat 1633.076 kb on - strandat 1633.515 kb on - strand, within Dshi_1568

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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1,631,696 - Dshi_1566 0.25 +0.2
1,631,913 + Dshi_1566 0.42 -1.5
1,631,921 - Dshi_1566 0.43 +0.2
1,632,241 - Dshi_1566 0.69 +0.2
1,632,248 + Dshi_1566 0.69 +0.3
1,632,279 + Dshi_1566 0.72 -2.0
1,632,289 + Dshi_1566 0.72 -0.0
1,632,498 + Dshi_1566 0.89 -0.6
1,632,630 + -0.4
1,633,076 - -0.9
1,633,515 - Dshi_1568 0.32 -1.8

Or see this region's nucleotide sequence