Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1466

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1464 and Dshi_1465 overlap by 4 nucleotidesDshi_1465 and Dshi_1466 overlap by 4 nucleotidesDshi_1466 and Dshi_1467 overlap by 13 nucleotides Dshi_1464: Dshi_1464 - GCN5-related N-acetyltransferase (RefSeq), at 1,519,918 to 1,520,427 _1464 Dshi_1465: Dshi_1465 - GCN5-related N-acetyltransferase (RefSeq), at 1,520,424 to 1,520,951 _1465 Dshi_1466: Dshi_1466 - GTP-binding protein Obg/CgtA (RefSeq), at 1,520,948 to 1,521,985 _1466 Dshi_1467: Dshi_1467 - glutamate 5-kinase (RefSeq), at 1,521,973 to 1,523,079 _1467 Position (kb) 1520 1521 1522Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1520.030 kb on + strand, within Dshi_1464at 1520.117 kb on - strand, within Dshi_1464at 1520.197 kb on + strand, within Dshi_1464at 1520.205 kb on - strand, within Dshi_1464at 1520.619 kb on - strand, within Dshi_1465at 1520.714 kb on - strand, within Dshi_1465at 1520.718 kb on + strand, within Dshi_1465at 1520.742 kb on + strand, within Dshi_1465at 1520.742 kb on + strand, within Dshi_1465at 1520.750 kb on - strand, within Dshi_1465at 1520.771 kb on - strand, within Dshi_1465at 1520.862 kb on + strandat 1520.867 kb on + strand, within Dshi_1465at 1520.870 kb on - strand, within Dshi_1465at 1520.875 kb on - strand, within Dshi_1465at 1520.899 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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1,520,030 + Dshi_1464 0.22 +1.2
1,520,117 - Dshi_1464 0.39 +1.1
1,520,197 + Dshi_1464 0.55 -2.5
1,520,205 - Dshi_1464 0.56 -0.2
1,520,619 - Dshi_1465 0.37 -1.3
1,520,714 - Dshi_1465 0.55 +0.2
1,520,718 + Dshi_1465 0.56 -1.3
1,520,742 + Dshi_1465 0.60 +1.8
1,520,742 + Dshi_1465 0.60 -0.7
1,520,750 - Dshi_1465 0.62 +1.2
1,520,771 - Dshi_1465 0.66 -0.6
1,520,862 + +0.2
1,520,867 + Dshi_1465 0.84 -1.1
1,520,870 - Dshi_1465 0.84 -0.8
1,520,875 - Dshi_1465 0.85 +3.1
1,520,899 - -2.0

Or see this region's nucleotide sequence