Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1172

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1171 and Dshi_1172 are separated by 273 nucleotidesDshi_1172 and Dshi_1173 are separated by 84 nucleotides Dshi_1171: Dshi_1171 - penicillin-binding protein, 1A family (RefSeq), at 1,201,406 to 1,203,928 _1171 Dshi_1172: Dshi_1172 - peptide chain release factor 2 (RefSeq), at 1,204,202 to 1,205,329 _1172 Dshi_1173: Dshi_1173 - NMT1/THI5 like domain protein (RefSeq), at 1,205,414 to 1,206,421 _1173 Position (kb) 1204 1205 1206Strain fitness (log2 ratio) -3 -2 -1 0 1at 1203.993 kb on + strandat 1205.532 kb on + strand, within Dshi_1173at 1205.575 kb on + strand, within Dshi_1173at 1205.825 kb on + strand, within Dshi_1173at 1205.878 kb on + strand, within Dshi_1173at 1205.881 kb on - strand, within Dshi_1173at 1205.886 kb on - strand, within Dshi_1173at 1205.886 kb on - strand, within Dshi_1173at 1205.923 kb on - strand, within Dshi_1173at 1205.923 kb on - strand, within Dshi_1173at 1206.080 kb on + strand, within Dshi_1173at 1206.094 kb on - strand, within Dshi_1173at 1206.146 kb on + strand, within Dshi_1173at 1206.158 kb on + strand, within Dshi_1173at 1206.258 kb on + strand, within Dshi_1173at 1206.266 kb on - strand, within Dshi_1173

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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1,203,993 + -2.4
1,205,532 + Dshi_1173 0.12 +0.3
1,205,575 + Dshi_1173 0.16 -0.7
1,205,825 + Dshi_1173 0.41 -3.4
1,205,878 + Dshi_1173 0.46 -1.3
1,205,881 - Dshi_1173 0.46 -1.0
1,205,886 - Dshi_1173 0.47 -0.6
1,205,886 - Dshi_1173 0.47 +0.6
1,205,923 - Dshi_1173 0.50 -0.4
1,205,923 - Dshi_1173 0.50 -1.9
1,206,080 + Dshi_1173 0.66 -0.3
1,206,094 - Dshi_1173 0.67 +1.6
1,206,146 + Dshi_1173 0.73 -2.1
1,206,158 + Dshi_1173 0.74 -0.1
1,206,258 + Dshi_1173 0.84 -0.3
1,206,266 - Dshi_1173 0.85 -0.9

Or see this region's nucleotide sequence