Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1155

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1153 and Dshi_1154 are separated by 24 nucleotidesDshi_1154 and Dshi_1155 overlap by 1 nucleotidesDshi_1155 and Dshi_1156 are separated by 137 nucleotidesDshi_1156 and Dshi_1157 are separated by 84 nucleotides Dshi_1153: Dshi_1153 - nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein (RefSeq), at 1,178,658 to 1,180,325 _1153 Dshi_1154: Dshi_1154 - hypothetical protein (RefSeq), at 1,180,350 to 1,180,655 _1154 Dshi_1155: Dshi_1155 - uroporphyrin-III C-methyltransferase (RefSeq), at 1,180,655 to 1,182,040 _1155 Dshi_1156: Dshi_1156 - transcriptional regulator, AsnC family (RefSeq), at 1,182,178 to 1,182,645 _1156 Dshi_1157: Dshi_1157 - protein of unknown function UPF0061 (RefSeq), at 1,182,730 to 1,184,175 _1157 Position (kb) 1180 1181 1182 1183Strain fitness (log2 ratio) -1 0 1at 1182.658 kb on + strandat 1182.926 kb on + strand, within Dshi_1157at 1182.991 kb on - strand, within Dshi_1157

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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1,182,658 + +0.4
1,182,926 + Dshi_1157 0.14 -0.7
1,182,991 - Dshi_1157 0.18 -0.6

Or see this region's nucleotide sequence