Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1146

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1144 and Dshi_1145 are separated by 97 nucleotidesDshi_1145 and Dshi_1146 are separated by 13 nucleotidesDshi_1146 and Dshi_1147 overlap by 4 nucleotides Dshi_1144: Dshi_1144 - cytochrome c oxidase subunit III (RefSeq), at 1,170,794 to 1,171,600 _1144 Dshi_1145: Dshi_1145 - hypothetical protein (RefSeq), at 1,171,698 to 1,172,399 _1145 Dshi_1146: Dshi_1146 - threonine synthase (RefSeq), at 1,172,413 to 1,173,804 _1146 Dshi_1147: Dshi_1147 - processing peptidase (RefSeq), at 1,173,801 to 1,175,081 _1147 Position (kb) 1172 1173 1174Strain fitness (log2 ratio) -1 0 1 2 3 4at 1171.936 kb on + strand, within Dshi_1145at 1174.051 kb on + strand, within Dshi_1147at 1174.241 kb on - strand, within Dshi_1147at 1174.460 kb on + strand, within Dshi_1147at 1174.579 kb on - strand, within Dshi_1147at 1174.586 kb on + strand, within Dshi_1147at 1174.586 kb on + strand, within Dshi_1147at 1174.586 kb on + strand, within Dshi_1147at 1174.586 kb on + strand, within Dshi_1147at 1174.594 kb on - strand, within Dshi_1147at 1174.751 kb on + strand, within Dshi_1147

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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1,171,936 + Dshi_1145 0.34 -1.5
1,174,051 + Dshi_1147 0.20 +0.6
1,174,241 - Dshi_1147 0.34 +0.4
1,174,460 + Dshi_1147 0.51 +2.0
1,174,579 - Dshi_1147 0.61 +2.5
1,174,586 + Dshi_1147 0.61 +0.4
1,174,586 + Dshi_1147 0.61 +0.8
1,174,586 + Dshi_1147 0.61 -0.1
1,174,586 + Dshi_1147 0.61 -0.4
1,174,594 - Dshi_1147 0.62 +4.3
1,174,751 + Dshi_1147 0.74 +0.5

Or see this region's nucleotide sequence