Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0775

Experiment: m.b. nitrate 300 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0773 and Dshi_0774 are separated by 42 nucleotidesDshi_0774 and Dshi_0775 are separated by 548 nucleotidesDshi_0775 and Dshi_0776 are separated by 278 nucleotides Dshi_0773: Dshi_0773 - protein of unknown function DUF692 (RefSeq), at 778,207 to 779,157 _0773 Dshi_0774: Dshi_0774 - hypothetical protein (RefSeq), at 779,200 to 779,487 _0774 Dshi_0775: Dshi_0775 - tartrate dehydrogenase (RefSeq), at 780,036 to 781,115 _0775 Dshi_0776: Dshi_0776 - cobalamin B12-binding domain protein (RefSeq), at 781,394 to 782,179 _0776 Position (kb) 780 781 782Strain fitness (log2 ratio) -2 -1 0 1 2 3at 779.256 kb on + strand, within Dshi_0774at 779.324 kb on - strand, within Dshi_0774at 779.335 kb on + strand, within Dshi_0774at 779.410 kb on - strand, within Dshi_0774at 779.415 kb on - strand, within Dshi_0774at 779.417 kb on + strand, within Dshi_0774at 779.431 kb on + strand, within Dshi_0774at 779.439 kb on - strand, within Dshi_0774at 779.460 kb on + strandat 779.522 kb on + strandat 779.530 kb on - strandat 779.695 kb on - strandat 779.706 kb on + strandat 779.706 kb on + strandat 779.714 kb on - strandat 779.733 kb on + strandat 779.804 kb on + strandat 779.814 kb on + strandat 779.836 kb on - strandat 779.836 kb on - strandat 779.870 kb on + strandat 779.878 kb on - strandat 779.908 kb on + strandat 779.963 kb on + strandat 779.963 kb on + strandat 780.105 kb on - strandat 780.136 kb on + strandat 780.221 kb on + strand, within Dshi_0775at 780.368 kb on + strand, within Dshi_0775at 780.401 kb on - strand, within Dshi_0775at 780.418 kb on - strand, within Dshi_0775at 780.459 kb on - strand, within Dshi_0775at 780.510 kb on - strand, within Dshi_0775at 780.638 kb on + strand, within Dshi_0775at 780.638 kb on - strand, within Dshi_0775at 780.745 kb on + strand, within Dshi_0775at 780.781 kb on - strand, within Dshi_0775at 780.794 kb on + strand, within Dshi_0775at 780.938 kb on + strand, within Dshi_0775at 780.943 kb on + strand, within Dshi_0775at 780.946 kb on - strand, within Dshi_0775at 781.007 kb on + strand, within Dshi_0775at 781.026 kb on + strandat 781.081 kb on - strandat 781.395 kb on + strandat 781.569 kb on + strand, within Dshi_0776at 781.645 kb on - strand, within Dshi_0776at 781.709 kb on + strand, within Dshi_0776at 782.003 kb on - strand, within Dshi_0776at 782.113 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
remove
779,256 + Dshi_0774 0.19 +0.1
779,324 - Dshi_0774 0.43 -0.1
779,335 + Dshi_0774 0.47 +0.9
779,410 - Dshi_0774 0.73 -0.8
779,415 - Dshi_0774 0.75 +0.5
779,417 + Dshi_0774 0.75 +0.9
779,431 + Dshi_0774 0.80 +0.5
779,439 - Dshi_0774 0.83 -0.3
779,460 + -2.3
779,522 + -1.5
779,530 - +0.5
779,695 - +0.7
779,706 + +1.2
779,706 + +0.5
779,714 - -1.4
779,733 + +0.5
779,804 + -1.5
779,814 + +1.9
779,836 - -0.1
779,836 - -1.7
779,870 + +3.7
779,878 - +0.5
779,908 + +0.5
779,963 + -1.0
779,963 + -0.1
780,105 - -1.2
780,136 + +1.2
780,221 + Dshi_0775 0.17 -0.7
780,368 + Dshi_0775 0.31 +0.5
780,401 - Dshi_0775 0.34 +2.1
780,418 - Dshi_0775 0.35 +1.5
780,459 - Dshi_0775 0.39 +0.0
780,510 - Dshi_0775 0.44 -1.0
780,638 + Dshi_0775 0.56 +1.7
780,638 - Dshi_0775 0.56 +0.8
780,745 + Dshi_0775 0.66 +0.1
780,781 - Dshi_0775 0.69 +1.5
780,794 + Dshi_0775 0.70 +0.5
780,938 + Dshi_0775 0.84 +1.5
780,943 + Dshi_0775 0.84 +0.5
780,946 - Dshi_0775 0.84 -0.5
781,007 + Dshi_0775 0.90 +0.5
781,026 + +0.5
781,081 - +0.9
781,395 + -0.3
781,569 + Dshi_0776 0.22 +2.1
781,645 - Dshi_0776 0.32 -1.4
781,709 + Dshi_0776 0.40 +0.5
782,003 - Dshi_0776 0.77 -1.3
782,113 - -1.8

Or see this region's nucleotide sequence