Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0728 and Dshi_0729 overlap by 4 nucleotides Dshi_0729 and Dshi_0730 overlap by 1 nucleotides Dshi_0730 and Dshi_0731 overlap by 4 nucleotides Dshi_0731 and Dshi_0732 overlap by 4 nucleotides Dshi_0732 and Dshi_0733 overlap by 8 nucleotides Dshi_0733 and Dshi_0734 overlap by 4 nucleotides
Dshi_0728: Dshi_0728 - NADH dehydrogenase (quinone) (RefSeq), at 737,004 to 739,244
_0728
Dshi_0729: Dshi_0729 - Na+/H+ antiporter MnhB subunit-related protein (RefSeq), at 739,241 to 739,693
_0729
Dshi_0730: Dshi_0730 - NADH-ubiquinone oxidoreductase chain 4L (RefSeq), at 739,693 to 740,112
_0730
Dshi_0731: Dshi_0731 - NADH dehydrogenase (quinone) (RefSeq), at 740,109 to 741,644
_0731
Dshi_0732: Dshi_0732 - cation antiporter (RefSeq), at 741,641 to 741,994
_0732
Dshi_0733: Dshi_0733 - multiple resistance and pH regulation protein F (RefSeq), at 741,987 to 742,343
_0733
Dshi_0734: Dshi_0734 - monovalent cation/proton antiporter, MnhG/PhaG subunit (RefSeq), at 742,340 to 742,687
_0734
Position (kb) 740
741
742 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 739.129 kb on + strand at 739.140 kb on - strand at 739.149 kb on - strand at 739.150 kb on - strand at 739.212 kb on - strand at 739.255 kb on + strand at 739.338 kb on + strand, within Dshi_0729 at 739.596 kb on + strand, within Dshi_0729 at 739.757 kb on - strand, within Dshi_0730 at 739.784 kb on + strand, within Dshi_0730 at 739.871 kb on + strand, within Dshi_0730 at 739.951 kb on + strand, within Dshi_0730 at 739.951 kb on - strand, within Dshi_0730 at 740.056 kb on + strand, within Dshi_0730 at 740.073 kb on + strand at 740.128 kb on + strand at 740.224 kb on + strand at 740.258 kb on - strand at 740.264 kb on + strand, within Dshi_0731 at 740.270 kb on - strand, within Dshi_0731 at 740.272 kb on - strand, within Dshi_0731 at 740.272 kb on - strand, within Dshi_0731 at 740.430 kb on + strand, within Dshi_0731 at 740.437 kb on + strand, within Dshi_0731 at 740.652 kb on + strand, within Dshi_0731 at 740.660 kb on + strand, within Dshi_0731 at 740.772 kb on + strand, within Dshi_0731 at 740.855 kb on + strand, within Dshi_0731 at 740.858 kb on - strand, within Dshi_0731 at 740.932 kb on + strand, within Dshi_0731 at 740.945 kb on - strand, within Dshi_0731 at 741.033 kb on + strand, within Dshi_0731 at 741.048 kb on - strand, within Dshi_0731 at 741.132 kb on + strand, within Dshi_0731 at 741.154 kb on + strand, within Dshi_0731 at 741.154 kb on + strand, within Dshi_0731 at 741.303 kb on - strand, within Dshi_0731 at 741.310 kb on + strand, within Dshi_0731 at 741.347 kb on + strand, within Dshi_0731 at 741.472 kb on - strand, within Dshi_0731 at 741.506 kb on + strand at 741.514 kb on - strand at 741.554 kb on + strand at 741.577 kb on + strand at 741.577 kb on + strand at 741.604 kb on - strand at 741.734 kb on - strand, within Dshi_0732 at 741.763 kb on + strand, within Dshi_0732 at 742.122 kb on - strand, within Dshi_0733 at 742.141 kb on + strand, within Dshi_0733 at 742.375 kb on + strand, within Dshi_0734 at 742.470 kb on + strand, within Dshi_0734 at 742.518 kb on - strand, within Dshi_0734 at 742.578 kb on + strand, within Dshi_0734 at 742.601 kb on + strand, within Dshi_0734 at 742.628 kb on + strand, within Dshi_0734 at 742.629 kb on - strand, within Dshi_0734
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 739,129 + +0.5 739,140 - +0.2 739,149 - +0.1 739,150 - +0.5 739,212 - +0.5 739,255 + -2.3 739,338 + Dshi_0729 0.21 +0.8 739,596 + Dshi_0729 0.78 +0.1 739,757 - Dshi_0730 0.15 +0.5 739,784 + Dshi_0730 0.22 -0.1 739,871 + Dshi_0730 0.42 +0.1 739,951 + Dshi_0730 0.61 +3.7 739,951 - Dshi_0730 0.61 +1.0 740,056 + Dshi_0730 0.86 +2.5 740,073 + +1.5 740,128 + -0.3 740,224 + -1.2 740,258 - -1.4 740,264 + Dshi_0731 0.10 -0.5 740,270 - Dshi_0731 0.10 -2.3 740,272 - Dshi_0731 0.11 -2.7 740,272 - Dshi_0731 0.11 -0.7 740,430 + Dshi_0731 0.21 -0.5 740,437 + Dshi_0731 0.21 -0.6 740,652 + Dshi_0731 0.35 +3.1 740,660 + Dshi_0731 0.36 +0.5 740,772 + Dshi_0731 0.43 +0.3 740,855 + Dshi_0731 0.49 -2.7 740,858 - Dshi_0731 0.49 -0.6 740,932 + Dshi_0731 0.54 -2.0 740,945 - Dshi_0731 0.54 +1.2 741,033 + Dshi_0731 0.60 +0.2 741,048 - Dshi_0731 0.61 -1.1 741,132 + Dshi_0731 0.67 -0.1 741,154 + Dshi_0731 0.68 +1.8 741,154 + Dshi_0731 0.68 -1.3 741,303 - Dshi_0731 0.78 +0.5 741,310 + Dshi_0731 0.78 -0.6 741,347 + Dshi_0731 0.81 +1.1 741,472 - Dshi_0731 0.89 -0.3 741,506 + -0.2 741,514 - +0.5 741,554 + -1.2 741,577 + -1.8 741,577 + +2.8 741,604 - -0.5 741,734 - Dshi_0732 0.26 -2.1 741,763 + Dshi_0732 0.34 -0.2 742,122 - Dshi_0733 0.38 -1.7 742,141 + Dshi_0733 0.43 +0.5 742,375 + Dshi_0734 0.10 +2.1 742,470 + Dshi_0734 0.37 +0.5 742,518 - Dshi_0734 0.51 -0.1 742,578 + Dshi_0734 0.68 +1.8 742,601 + Dshi_0734 0.75 +2.5 742,628 + Dshi_0734 0.83 +2.8 742,629 - Dshi_0734 0.83 -2.7
Or see this region's nucleotide sequence