Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0571

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0570 and Dshi_0571 are separated by 45 nucleotidesDshi_0571 and Dshi_0572 overlap by 4 nucleotides Dshi_0570: Dshi_0570 - TonB-dependent receptor (RefSeq), at 558,999 to 561,026 _0570 Dshi_0571: Dshi_0571 - ABC transporter related (RefSeq), at 561,072 to 561,854 _0571 Dshi_0572: Dshi_0572 - transport system permease protein (RefSeq), at 561,851 to 562,933 _0572 Position (kb) 561 562Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 560.073 kb on - strand, within Dshi_0570at 560.129 kb on - strand, within Dshi_0570at 560.148 kb on + strand, within Dshi_0570at 560.155 kb on + strand, within Dshi_0570at 560.162 kb on + strand, within Dshi_0570at 560.170 kb on - strand, within Dshi_0570at 560.170 kb on - strand, within Dshi_0570at 560.170 kb on - strand, within Dshi_0570at 560.207 kb on + strand, within Dshi_0570at 560.236 kb on + strand, within Dshi_0570at 560.290 kb on + strand, within Dshi_0570at 560.310 kb on - strand, within Dshi_0570at 560.310 kb on - strand, within Dshi_0570at 560.310 kb on - strand, within Dshi_0570at 560.312 kb on + strand, within Dshi_0570at 560.320 kb on - strand, within Dshi_0570at 560.342 kb on + strand, within Dshi_0570at 560.360 kb on + strand, within Dshi_0570at 560.368 kb on - strand, within Dshi_0570at 560.413 kb on + strand, within Dshi_0570at 560.421 kb on - strand, within Dshi_0570at 560.439 kb on - strand, within Dshi_0570at 560.461 kb on + strand, within Dshi_0570at 560.469 kb on - strand, within Dshi_0570at 560.516 kb on + strand, within Dshi_0570at 560.561 kb on - strand, within Dshi_0570at 560.563 kb on - strand, within Dshi_0570at 560.568 kb on + strand, within Dshi_0570at 560.577 kb on - strand, within Dshi_0570at 560.603 kb on - strand, within Dshi_0570at 560.616 kb on + strand, within Dshi_0570at 560.616 kb on - strand, within Dshi_0570at 560.624 kb on - strand, within Dshi_0570at 560.628 kb on + strand, within Dshi_0570at 560.663 kb on - strand, within Dshi_0570at 560.671 kb on + strand, within Dshi_0570at 560.671 kb on + strand, within Dshi_0570at 560.671 kb on + strand, within Dshi_0570at 560.671 kb on + strand, within Dshi_0570at 560.671 kb on + strand, within Dshi_0570at 560.672 kb on - strand, within Dshi_0570at 560.674 kb on + strand, within Dshi_0570at 560.679 kb on - strand, within Dshi_0570at 560.679 kb on - strand, within Dshi_0570at 560.679 kb on - strand, within Dshi_0570at 560.679 kb on - strand, within Dshi_0570at 560.679 kb on - strand, within Dshi_0570at 560.725 kb on - strand, within Dshi_0570at 560.728 kb on + strand, within Dshi_0570at 560.728 kb on + strand, within Dshi_0570at 560.728 kb on + strand, within Dshi_0570at 560.728 kb on + strand, within Dshi_0570at 560.728 kb on + strand, within Dshi_0570at 560.728 kb on + strand, within Dshi_0570at 560.728 kb on + strand, within Dshi_0570at 560.730 kb on + strand, within Dshi_0570at 560.736 kb on - strand, within Dshi_0570at 560.736 kb on - strand, within Dshi_0570at 560.773 kb on + strand, within Dshi_0570at 560.820 kb on - strand, within Dshi_0570at 560.850 kb on + strandat 560.850 kb on + strandat 560.869 kb on + strandat 560.956 kb on + strandat 560.956 kb on + strandat 560.975 kb on + strandat 561.019 kb on - strandat 561.069 kb on - strandat 561.070 kb on + strandat 561.070 kb on + strandat 561.085 kb on + strandat 561.085 kb on + strandat 561.129 kb on + strandat 561.144 kb on + strandat 561.144 kb on + strandat 561.144 kb on + strandat 561.151 kb on + strand, within Dshi_0571at 561.151 kb on + strand, within Dshi_0571at 561.152 kb on - strand, within Dshi_0571at 561.160 kb on - strand, within Dshi_0571at 561.161 kb on + strand, within Dshi_0571at 561.171 kb on + strand, within Dshi_0571at 561.222 kb on - strand, within Dshi_0571at 561.356 kb on - strand, within Dshi_0571at 561.391 kb on + strand, within Dshi_0571at 561.499 kb on + strand, within Dshi_0571at 561.524 kb on + strand, within Dshi_0571at 561.527 kb on - strand, within Dshi_0571at 561.532 kb on - strand, within Dshi_0571at 561.645 kb on + strand, within Dshi_0571at 561.645 kb on + strand, within Dshi_0571at 561.649 kb on - strand, within Dshi_0571at 561.737 kb on - strand, within Dshi_0571at 561.742 kb on - strand, within Dshi_0571at 561.821 kb on + strandat 561.829 kb on - strandat 561.885 kb on + strandat 561.965 kb on - strand, within Dshi_0572at 562.069 kb on - strand, within Dshi_0572at 562.135 kb on + strand, within Dshi_0572at 562.146 kb on + strand, within Dshi_0572at 562.154 kb on - strand, within Dshi_0572at 562.164 kb on - strand, within Dshi_0572at 562.180 kb on - strand, within Dshi_0572at 562.201 kb on - strand, within Dshi_0572at 562.284 kb on - strand, within Dshi_0572at 562.309 kb on + strand, within Dshi_0572at 562.358 kb on - strand, within Dshi_0572at 562.365 kb on - strand, within Dshi_0572at 562.409 kb on + strand, within Dshi_0572at 562.497 kb on + strand, within Dshi_0572at 562.587 kb on - strand, within Dshi_0572at 562.781 kb on + strand, within Dshi_0572at 562.783 kb on + strand, within Dshi_0572at 562.783 kb on + strand, within Dshi_0572at 562.783 kb on + strand, within Dshi_0572at 562.784 kb on - strand, within Dshi_0572at 562.791 kb on - strand, within Dshi_0572at 562.791 kb on - strand, within Dshi_0572

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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560,073 - Dshi_0570 0.53 -0.7
560,129 - Dshi_0570 0.56 -0.7
560,148 + Dshi_0570 0.57 +0.1
560,155 + Dshi_0570 0.57 -0.6
560,162 + Dshi_0570 0.57 +2.2
560,170 - Dshi_0570 0.58 +0.2
560,170 - Dshi_0570 0.58 +0.9
560,170 - Dshi_0570 0.58 +1.2
560,207 + Dshi_0570 0.60 -0.7
560,236 + Dshi_0570 0.61 -0.3
560,290 + Dshi_0570 0.64 -0.9
560,310 - Dshi_0570 0.65 +0.2
560,310 - Dshi_0570 0.65 -0.1
560,310 - Dshi_0570 0.65 -1.2
560,312 + Dshi_0570 0.65 +0.0
560,320 - Dshi_0570 0.65 -0.6
560,342 + Dshi_0570 0.66 -0.7
560,360 + Dshi_0570 0.67 +1.2
560,368 - Dshi_0570 0.68 +1.8
560,413 + Dshi_0570 0.70 +2.4
560,421 - Dshi_0570 0.70 -0.9
560,439 - Dshi_0570 0.71 +2.2
560,461 + Dshi_0570 0.72 -1.3
560,469 - Dshi_0570 0.72 -1.1
560,516 + Dshi_0570 0.75 +1.8
560,561 - Dshi_0570 0.77 -3.3
560,563 - Dshi_0570 0.77 -0.1
560,568 + Dshi_0570 0.77 +0.2
560,577 - Dshi_0570 0.78 -0.0
560,603 - Dshi_0570 0.79 -1.9
560,616 + Dshi_0570 0.80 -1.2
560,616 - Dshi_0570 0.80 -0.1
560,624 - Dshi_0570 0.80 -0.2
560,628 + Dshi_0570 0.80 -1.1
560,663 - Dshi_0570 0.82 +1.2
560,671 + Dshi_0570 0.82 +2.4
560,671 + Dshi_0570 0.82 -0.2
560,671 + Dshi_0570 0.82 -0.2
560,671 + Dshi_0570 0.82 -0.5
560,671 + Dshi_0570 0.82 +0.5
560,672 - Dshi_0570 0.82 +0.4
560,674 + Dshi_0570 0.83 +1.5
560,679 - Dshi_0570 0.83 +0.4
560,679 - Dshi_0570 0.83 -1.4
560,679 - Dshi_0570 0.83 -2.6
560,679 - Dshi_0570 0.83 +2.0
560,679 - Dshi_0570 0.83 -1.4
560,725 - Dshi_0570 0.85 -1.1
560,728 + Dshi_0570 0.85 +1.8
560,728 + Dshi_0570 0.85 -2.4
560,728 + Dshi_0570 0.85 +0.2
560,728 + Dshi_0570 0.85 -2.8
560,728 + Dshi_0570 0.85 +1.4
560,728 + Dshi_0570 0.85 +1.2
560,728 + Dshi_0570 0.85 -1.5
560,730 + Dshi_0570 0.85 -0.4
560,736 - Dshi_0570 0.86 -0.6
560,736 - Dshi_0570 0.86 -1.4
560,773 + Dshi_0570 0.87 +3.4
560,820 - Dshi_0570 0.90 -0.9
560,850 + +2.8
560,850 + +0.8
560,869 + -0.8
560,956 + -0.4
560,956 + -0.3
560,975 + +0.4
561,019 - -1.9
561,069 - -0.8
561,070 + +0.2
561,070 + -0.8
561,085 + -1.8
561,085 + +0.2
561,129 + +0.9
561,144 + +1.8
561,144 + -0.8
561,144 + +1.8
561,151 + Dshi_0571 0.10 +0.2
561,151 + Dshi_0571 0.10 -3.7
561,152 - Dshi_0571 0.10 -1.8
561,160 - Dshi_0571 0.11 -0.1
561,161 + Dshi_0571 0.11 -0.4
561,171 + Dshi_0571 0.13 +2.0
561,222 - Dshi_0571 0.19 +1.0
561,356 - Dshi_0571 0.36 -1.6
561,391 + Dshi_0571 0.41 -0.5
561,499 + Dshi_0571 0.55 +2.2
561,524 + Dshi_0571 0.58 -0.9
561,527 - Dshi_0571 0.58 +2.8
561,532 - Dshi_0571 0.59 -0.5
561,645 + Dshi_0571 0.73 -2.2
561,645 + Dshi_0571 0.73 +0.8
561,649 - Dshi_0571 0.74 -0.8
561,737 - Dshi_0571 0.85 -3.4
561,742 - Dshi_0571 0.86 -1.1
561,821 + -0.8
561,829 - +0.8
561,885 + +0.2
561,965 - Dshi_0572 0.11 +0.5
562,069 - Dshi_0572 0.20 -0.8
562,135 + Dshi_0572 0.26 -0.4
562,146 + Dshi_0572 0.27 +0.9
562,154 - Dshi_0572 0.28 -1.1
562,164 - Dshi_0572 0.29 -0.8
562,180 - Dshi_0572 0.30 +0.2
562,201 - Dshi_0572 0.32 -2.1
562,284 - Dshi_0572 0.40 +0.3
562,309 + Dshi_0572 0.42 +1.8
562,358 - Dshi_0572 0.47 -0.8
562,365 - Dshi_0572 0.47 -1.7
562,409 + Dshi_0572 0.52 -0.6
562,497 + Dshi_0572 0.60 +1.8
562,587 - Dshi_0572 0.68 -1.5
562,781 + Dshi_0572 0.86 +1.2
562,783 + Dshi_0572 0.86 -2.6
562,783 + Dshi_0572 0.86 -3.4
562,783 + Dshi_0572 0.86 +0.2
562,784 - Dshi_0572 0.86 +0.2
562,791 - Dshi_0572 0.87 -1.0
562,791 - Dshi_0572 0.87 -1.3

Or see this region's nucleotide sequence