Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0499

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0497 and Dshi_0498 overlap by 4 nucleotidesDshi_0498 and Dshi_0499 overlap by 4 nucleotidesDshi_0499 and Dshi_0500 overlap by 1 nucleotidesDshi_0500 and Dshi_0501 overlap by 4 nucleotides Dshi_0497: Dshi_0497 - hypothetical protein (RefSeq), at 482,822 to 483,556 _0497 Dshi_0498: Dshi_0498 - hypothetical protein (RefSeq), at 483,553 to 484,110 _0498 Dshi_0499: Dshi_0499 - hypothetical protein (RefSeq), at 484,107 to 485,120 _0499 Dshi_0500: Dshi_0500 - molybdopterin-guanine dinucleotide biosynthesis protein A (RefSeq), at 485,120 to 485,656 _0500 Dshi_0501: Dshi_0501 - hypothetical protein (RefSeq), at 485,653 to 486,264 _0501 Position (kb) 484 485 486Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 483.176 kb on - strand, within Dshi_0497at 483.205 kb on + strand, within Dshi_0497at 483.226 kb on + strand, within Dshi_0497at 483.274 kb on + strand, within Dshi_0497at 483.344 kb on + strand, within Dshi_0497at 483.344 kb on + strand, within Dshi_0497at 483.344 kb on - strand, within Dshi_0497at 483.395 kb on + strand, within Dshi_0497at 483.396 kb on - strand, within Dshi_0497at 483.398 kb on + strand, within Dshi_0497at 483.403 kb on + strand, within Dshi_0497at 483.424 kb on - strand, within Dshi_0497at 483.429 kb on - strand, within Dshi_0497at 483.436 kb on + strand, within Dshi_0497at 483.436 kb on - strand, within Dshi_0497at 483.545 kb on - strandat 483.569 kb on + strandat 483.620 kb on + strand, within Dshi_0498at 483.628 kb on - strand, within Dshi_0498at 483.628 kb on - strand, within Dshi_0498at 483.755 kb on + strand, within Dshi_0498at 483.758 kb on - strand, within Dshi_0498at 483.813 kb on - strand, within Dshi_0498at 483.906 kb on + strand, within Dshi_0498at 483.915 kb on - strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.966 kb on + strand, within Dshi_0498at 483.974 kb on + strand, within Dshi_0498at 483.974 kb on + strand, within Dshi_0498at 483.974 kb on - strand, within Dshi_0498at 483.974 kb on - strand, within Dshi_0498at 483.976 kb on + strand, within Dshi_0498at 483.982 kb on - strand, within Dshi_0498at 483.982 kb on - strand, within Dshi_0498at 484.044 kb on + strand, within Dshi_0498at 484.053 kb on - strand, within Dshi_0498at 484.066 kb on + strandat 484.066 kb on + strandat 484.067 kb on + strandat 484.068 kb on - strandat 484.101 kb on + strandat 484.115 kb on + strandat 484.115 kb on + strandat 484.115 kb on + strandat 484.156 kb on - strandat 484.183 kb on + strandat 484.191 kb on - strandat 484.227 kb on + strand, within Dshi_0499at 484.245 kb on - strand, within Dshi_0499at 484.268 kb on + strand, within Dshi_0499at 484.323 kb on + strand, within Dshi_0499at 484.373 kb on + strand, within Dshi_0499at 484.378 kb on + strand, within Dshi_0499at 484.378 kb on - strand, within Dshi_0499at 484.401 kb on + strand, within Dshi_0499at 484.402 kb on + strand, within Dshi_0499at 484.402 kb on + strand, within Dshi_0499at 484.405 kb on - strand, within Dshi_0499at 484.407 kb on - strand, within Dshi_0499at 484.407 kb on - strand, within Dshi_0499at 484.407 kb on - strand, within Dshi_0499at 484.415 kb on + strand, within Dshi_0499at 484.458 kb on + strand, within Dshi_0499at 484.467 kb on + strand, within Dshi_0499at 484.480 kb on - strand, within Dshi_0499at 484.497 kb on + strand, within Dshi_0499at 484.501 kb on + strand, within Dshi_0499at 484.508 kb on - strand, within Dshi_0499at 484.509 kb on - strand, within Dshi_0499at 484.509 kb on - strand, within Dshi_0499at 484.509 kb on - strand, within Dshi_0499at 484.509 kb on - strand, within Dshi_0499at 484.526 kb on - strand, within Dshi_0499at 484.549 kb on + strand, within Dshi_0499at 484.566 kb on - strand, within Dshi_0499at 484.571 kb on - strand, within Dshi_0499at 484.576 kb on - strand, within Dshi_0499at 484.592 kb on - strand, within Dshi_0499at 484.655 kb on - strand, within Dshi_0499at 484.655 kb on - strand, within Dshi_0499at 484.655 kb on - strand, within Dshi_0499at 484.657 kb on + strand, within Dshi_0499at 484.662 kb on + strand, within Dshi_0499at 484.665 kb on - strand, within Dshi_0499at 484.665 kb on - strand, within Dshi_0499at 484.690 kb on - strand, within Dshi_0499at 484.690 kb on - strand, within Dshi_0499at 484.693 kb on + strand, within Dshi_0499at 484.702 kb on + strand, within Dshi_0499at 484.718 kb on - strand, within Dshi_0499at 484.727 kb on + strand, within Dshi_0499at 484.735 kb on - strand, within Dshi_0499at 484.738 kb on - strand, within Dshi_0499at 484.741 kb on + strand, within Dshi_0499at 484.741 kb on + strand, within Dshi_0499at 484.741 kb on + strand, within Dshi_0499at 484.742 kb on + strand, within Dshi_0499at 484.742 kb on + strand, within Dshi_0499at 484.749 kb on - strand, within Dshi_0499at 484.750 kb on - strand, within Dshi_0499at 484.758 kb on + strand, within Dshi_0499at 484.758 kb on + strand, within Dshi_0499at 484.766 kb on - strand, within Dshi_0499at 484.766 kb on - strand, within Dshi_0499at 484.766 kb on - strand, within Dshi_0499at 484.789 kb on - strand, within Dshi_0499at 484.799 kb on + strand, within Dshi_0499at 484.799 kb on - strand, within Dshi_0499at 484.805 kb on + strand, within Dshi_0499at 484.813 kb on + strand, within Dshi_0499at 484.813 kb on + strand, within Dshi_0499at 484.821 kb on - strand, within Dshi_0499at 484.821 kb on - strand, within Dshi_0499at 484.831 kb on - strand, within Dshi_0499at 484.831 kb on - strand, within Dshi_0499at 484.840 kb on + strand, within Dshi_0499at 484.868 kb on + strand, within Dshi_0499at 484.876 kb on - strand, within Dshi_0499at 484.879 kb on + strand, within Dshi_0499at 484.887 kb on - strand, within Dshi_0499at 484.887 kb on - strand, within Dshi_0499at 484.984 kb on - strand, within Dshi_0499at 485.013 kb on + strand, within Dshi_0499at 485.023 kb on + strandat 485.029 kb on + strandat 485.115 kb on + strandat 485.122 kb on - strandat 485.123 kb on - strandat 485.123 kb on - strandat 485.123 kb on - strandat 485.123 kb on - strandat 485.144 kb on + strandat 485.237 kb on - strandat 485.237 kb on - strand, within Dshi_0500at 485.354 kb on - strand, within Dshi_0500at 485.379 kb on + strand, within Dshi_0500at 485.467 kb on + strand, within Dshi_0500at 485.485 kb on - strand, within Dshi_0500at 485.562 kb on + strand, within Dshi_0500at 485.579 kb on + strand, within Dshi_0500at 485.755 kb on - strand, within Dshi_0501at 485.770 kb on - strand, within Dshi_0501at 485.783 kb on + strand, within Dshi_0501at 485.783 kb on + strand, within Dshi_0501at 485.813 kb on - strand, within Dshi_0501at 485.853 kb on + strand, within Dshi_0501at 485.912 kb on + strand, within Dshi_0501at 485.912 kb on + strand, within Dshi_0501at 485.939 kb on - strand, within Dshi_0501at 485.947 kb on + strand, within Dshi_0501at 485.947 kb on + strand, within Dshi_0501at 485.958 kb on + strand, within Dshi_0501at 486.014 kb on + strand, within Dshi_0501at 486.018 kb on + strand, within Dshi_0501at 486.035 kb on - strand, within Dshi_0501at 486.059 kb on - strand, within Dshi_0501at 486.069 kb on + strand, within Dshi_0501at 486.081 kb on + strand, within Dshi_0501at 486.089 kb on - strand, within Dshi_0501at 486.089 kb on - strand, within Dshi_0501at 486.099 kb on - strand, within Dshi_0501

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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483,176 - Dshi_0497 0.48 +2.6
483,205 + Dshi_0497 0.52 -0.9
483,226 + Dshi_0497 0.55 -0.6
483,274 + Dshi_0497 0.61 -0.8
483,344 + Dshi_0497 0.71 +1.8
483,344 + Dshi_0497 0.71 -0.8
483,344 - Dshi_0497 0.71 -0.6
483,395 + Dshi_0497 0.78 +0.9
483,396 - Dshi_0497 0.78 +0.1
483,398 + Dshi_0497 0.78 +2.4
483,403 + Dshi_0497 0.79 +2.1
483,424 - Dshi_0497 0.82 -0.1
483,429 - Dshi_0497 0.83 -0.2
483,436 + Dshi_0497 0.84 -1.6
483,436 - Dshi_0497 0.84 -0.6
483,545 - +1.3
483,569 + -0.8
483,620 + Dshi_0498 0.12 +3.0
483,628 - Dshi_0498 0.13 -0.0
483,628 - Dshi_0498 0.13 -0.8
483,755 + Dshi_0498 0.36 -0.1
483,758 - Dshi_0498 0.37 +0.1
483,813 - Dshi_0498 0.47 -1.4
483,906 + Dshi_0498 0.63 +1.5
483,915 - Dshi_0498 0.65 +0.4
483,966 + Dshi_0498 0.74 -0.1
483,966 + Dshi_0498 0.74 +0.9
483,966 + Dshi_0498 0.74 -0.0
483,966 + Dshi_0498 0.74 +0.5
483,966 + Dshi_0498 0.74 -0.7
483,974 + Dshi_0498 0.75 -0.4
483,974 + Dshi_0498 0.75 -2.8
483,974 - Dshi_0498 0.75 -1.0
483,974 - Dshi_0498 0.75 +0.2
483,976 + Dshi_0498 0.76 +1.8
483,982 - Dshi_0498 0.77 -0.2
483,982 - Dshi_0498 0.77 -0.5
484,044 + Dshi_0498 0.88 +0.2
484,053 - Dshi_0498 0.90 +1.2
484,066 + +0.1
484,066 + -0.1
484,067 + -0.9
484,068 - -0.1
484,101 + -0.0
484,115 + -3.1
484,115 + -0.1
484,115 + +0.5
484,156 - +0.1
484,183 + -0.7
484,191 - -0.5
484,227 + Dshi_0499 0.12 +1.1
484,245 - Dshi_0499 0.14 +0.1
484,268 + Dshi_0499 0.16 -1.0
484,323 + Dshi_0499 0.21 -0.1
484,373 + Dshi_0499 0.26 +1.4
484,378 + Dshi_0499 0.27 -0.2
484,378 - Dshi_0499 0.27 -1.3
484,401 + Dshi_0499 0.29 -2.7
484,402 + Dshi_0499 0.29 +1.2
484,402 + Dshi_0499 0.29 +0.2
484,405 - Dshi_0499 0.29 -0.7
484,407 - Dshi_0499 0.30 +0.4
484,407 - Dshi_0499 0.30 +3.5
484,407 - Dshi_0499 0.30 +0.3
484,415 + Dshi_0499 0.30 -0.3
484,458 + Dshi_0499 0.35 +1.2
484,467 + Dshi_0499 0.36 +2.6
484,480 - Dshi_0499 0.37 -0.1
484,497 + Dshi_0499 0.38 +0.1
484,501 + Dshi_0499 0.39 +0.5
484,508 - Dshi_0499 0.40 +1.0
484,509 - Dshi_0499 0.40 -1.3
484,509 - Dshi_0499 0.40 -0.1
484,509 - Dshi_0499 0.40 +0.3
484,509 - Dshi_0499 0.40 -0.8
484,526 - Dshi_0499 0.41 +0.7
484,549 + Dshi_0499 0.44 +1.6
484,566 - Dshi_0499 0.45 +3.0
484,571 - Dshi_0499 0.46 -2.1
484,576 - Dshi_0499 0.46 -0.2
484,592 - Dshi_0499 0.48 +0.7
484,655 - Dshi_0499 0.54 +1.5
484,655 - Dshi_0499 0.54 -2.8
484,655 - Dshi_0499 0.54 +0.5
484,657 + Dshi_0499 0.54 +0.4
484,662 + Dshi_0499 0.55 +0.4
484,665 - Dshi_0499 0.55 -0.8
484,665 - Dshi_0499 0.55 -1.0
484,690 - Dshi_0499 0.57 -1.7
484,690 - Dshi_0499 0.57 +1.4
484,693 + Dshi_0499 0.58 +2.5
484,702 + Dshi_0499 0.59 -1.0
484,718 - Dshi_0499 0.60 -0.3
484,727 + Dshi_0499 0.61 -0.1
484,735 - Dshi_0499 0.62 -0.2
484,738 - Dshi_0499 0.62 -0.8
484,741 + Dshi_0499 0.63 -1.1
484,741 + Dshi_0499 0.63 +0.0
484,741 + Dshi_0499 0.63 +1.8
484,742 + Dshi_0499 0.63 -0.1
484,742 + Dshi_0499 0.63 -0.7
484,749 - Dshi_0499 0.63 +0.7
484,750 - Dshi_0499 0.63 -1.0
484,758 + Dshi_0499 0.64 +2.2
484,758 + Dshi_0499 0.64 -0.2
484,766 - Dshi_0499 0.65 +0.1
484,766 - Dshi_0499 0.65 -0.4
484,766 - Dshi_0499 0.65 -1.7
484,789 - Dshi_0499 0.67 -1.1
484,799 + Dshi_0499 0.68 +0.2
484,799 - Dshi_0499 0.68 -3.3
484,805 + Dshi_0499 0.69 +0.3
484,813 + Dshi_0499 0.70 -2.6
484,813 + Dshi_0499 0.70 -0.5
484,821 - Dshi_0499 0.70 +1.8
484,821 - Dshi_0499 0.70 -0.2
484,831 - Dshi_0499 0.71 -0.6
484,831 - Dshi_0499 0.71 +0.7
484,840 + Dshi_0499 0.72 +0.8
484,868 + Dshi_0499 0.75 +1.2
484,876 - Dshi_0499 0.76 -0.3
484,879 + Dshi_0499 0.76 +1.1
484,887 - Dshi_0499 0.77 -0.0
484,887 - Dshi_0499 0.77 -1.1
484,984 - Dshi_0499 0.86 +1.6
485,013 + Dshi_0499 0.89 -0.4
485,023 + +0.5
485,029 + +1.0
485,115 + -0.5
485,122 - -1.0
485,123 - +1.1
485,123 - -0.0
485,123 - +0.6
485,123 - -0.3
485,144 + -0.6
485,237 - +1.8
485,237 - Dshi_0500 0.22 -2.8
485,354 - Dshi_0500 0.44 +0.8
485,379 + Dshi_0500 0.48 -0.3
485,467 + Dshi_0500 0.65 +0.2
485,485 - Dshi_0500 0.68 +3.7
485,562 + Dshi_0500 0.82 -1.2
485,579 + Dshi_0500 0.85 +0.2
485,755 - Dshi_0501 0.17 -0.4
485,770 - Dshi_0501 0.19 -3.2
485,783 + Dshi_0501 0.21 -0.9
485,783 + Dshi_0501 0.21 +0.3
485,813 - Dshi_0501 0.26 +0.9
485,853 + Dshi_0501 0.33 -0.6
485,912 + Dshi_0501 0.42 -0.5
485,912 + Dshi_0501 0.42 -0.3
485,939 - Dshi_0501 0.47 -1.3
485,947 + Dshi_0501 0.48 -0.0
485,947 + Dshi_0501 0.48 -2.1
485,958 + Dshi_0501 0.50 -1.3
486,014 + Dshi_0501 0.59 -0.9
486,018 + Dshi_0501 0.60 +0.0
486,035 - Dshi_0501 0.62 +0.1
486,059 - Dshi_0501 0.66 -0.1
486,069 + Dshi_0501 0.68 +1.5
486,081 + Dshi_0501 0.70 -0.3
486,089 - Dshi_0501 0.71 -2.1
486,089 - Dshi_0501 0.71 -0.6
486,099 - Dshi_0501 0.73 -0.9

Or see this region's nucleotide sequence