Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0481 and Dshi_0482 are separated by 467 nucleotides Dshi_0482 and Dshi_0483 are separated by 158 nucleotides
Dshi_0481: Dshi_0481 - hypothetical protein (RefSeq), at 466,019 to 466,831
_0481
Dshi_0482: Dshi_0482 - hypothetical protein (RefSeq), at 467,299 to 467,784
_0482
Dshi_0483: Dshi_0483 - hypothetical protein (RefSeq), at 467,943 to 469,130
_0483
Position (kb) 467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 466.331 kb on + strand, within Dshi_0481 at 466.334 kb on - strand, within Dshi_0481 at 466.351 kb on - strand, within Dshi_0481 at 466.433 kb on - strand, within Dshi_0481 at 466.486 kb on - strand, within Dshi_0481 at 466.583 kb on - strand, within Dshi_0481 at 466.583 kb on - strand, within Dshi_0481 at 466.583 kb on - strand, within Dshi_0481 at 466.637 kb on + strand, within Dshi_0481 at 466.637 kb on + strand, within Dshi_0481 at 466.674 kb on - strand, within Dshi_0481 at 466.702 kb on + strand, within Dshi_0481 at 466.702 kb on + strand, within Dshi_0481 at 466.703 kb on - strand, within Dshi_0481 at 466.710 kb on - strand, within Dshi_0481 at 466.710 kb on - strand, within Dshi_0481 at 466.731 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.743 kb on + strand, within Dshi_0481 at 466.751 kb on - strand at 466.751 kb on - strand at 466.751 kb on - strand at 466.751 kb on - strand at 466.763 kb on - strand at 466.763 kb on - strand at 466.786 kb on + strand at 466.799 kb on - strand at 466.799 kb on - strand at 466.819 kb on - strand at 466.854 kb on + strand at 466.856 kb on + strand at 466.864 kb on - strand at 466.891 kb on + strand at 466.894 kb on - strand at 466.963 kb on + strand at 466.963 kb on + strand at 466.963 kb on + strand at 466.963 kb on + strand at 466.971 kb on - strand at 466.971 kb on - strand at 466.971 kb on - strand at 466.986 kb on + strand at 467.017 kb on + strand at 467.025 kb on - strand at 467.025 kb on - strand at 467.045 kb on + strand at 467.059 kb on + strand at 467.159 kb on + strand at 467.169 kb on + strand at 467.169 kb on + strand at 467.169 kb on + strand at 467.169 kb on + strand at 467.169 kb on + strand at 467.177 kb on - strand at 467.177 kb on - strand at 467.211 kb on - strand at 467.217 kb on - strand at 467.252 kb on + strand at 467.252 kb on + strand at 467.253 kb on + strand at 467.253 kb on + strand at 467.271 kb on + strand at 467.271 kb on + strand at 467.286 kb on + strand at 467.294 kb on - strand at 467.334 kb on - strand at 467.346 kb on + strand at 467.351 kb on + strand, within Dshi_0482 at 467.354 kb on - strand, within Dshi_0482 at 467.356 kb on + strand, within Dshi_0482 at 467.356 kb on + strand, within Dshi_0482 at 467.356 kb on + strand, within Dshi_0482 at 467.361 kb on + strand, within Dshi_0482 at 467.364 kb on - strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.393 kb on + strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.401 kb on - strand, within Dshi_0482 at 467.403 kb on + strand, within Dshi_0482 at 467.411 kb on - strand, within Dshi_0482 at 467.411 kb on - strand, within Dshi_0482 at 467.427 kb on + strand, within Dshi_0482 at 467.427 kb on + strand, within Dshi_0482 at 467.427 kb on + strand, within Dshi_0482 at 467.435 kb on - strand, within Dshi_0482 at 467.435 kb on - strand, within Dshi_0482 at 467.435 kb on - strand, within Dshi_0482 at 467.452 kb on + strand, within Dshi_0482 at 467.453 kb on - strand, within Dshi_0482 at 467.482 kb on + strand, within Dshi_0482 at 467.482 kb on + strand, within Dshi_0482 at 467.482 kb on + strand, within Dshi_0482 at 467.482 kb on + strand, within Dshi_0482 at 467.490 kb on - strand, within Dshi_0482 at 467.495 kb on + strand, within Dshi_0482 at 467.495 kb on + strand, within Dshi_0482 at 467.500 kb on + strand, within Dshi_0482 at 467.587 kb on - strand, within Dshi_0482 at 467.589 kb on + strand, within Dshi_0482 at 467.589 kb on + strand, within Dshi_0482 at 467.597 kb on + strand, within Dshi_0482 at 467.597 kb on - strand, within Dshi_0482 at 467.597 kb on - strand, within Dshi_0482 at 467.597 kb on - strand, within Dshi_0482 at 467.603 kb on + strand, within Dshi_0482 at 467.634 kb on - strand, within Dshi_0482 at 467.636 kb on + strand, within Dshi_0482 at 467.659 kb on - strand, within Dshi_0482 at 467.661 kb on + strand, within Dshi_0482 at 467.670 kb on - strand, within Dshi_0482 at 467.704 kb on + strand, within Dshi_0482 at 467.704 kb on + strand, within Dshi_0482 at 467.709 kb on + strand, within Dshi_0482 at 467.711 kb on - strand, within Dshi_0482 at 467.711 kb on - strand, within Dshi_0482 at 467.717 kb on - strand, within Dshi_0482 at 467.723 kb on + strand, within Dshi_0482 at 467.723 kb on + strand, within Dshi_0482 at 467.750 kb on + strand at 467.758 kb on - strand at 467.758 kb on - strand at 467.820 kb on - strand at 467.835 kb on - strand at 467.835 kb on - strand at 467.835 kb on - strand at 467.835 kb on - strand at 467.850 kb on + strand at 467.858 kb on - strand at 467.864 kb on + strand at 467.864 kb on + strand at 467.872 kb on - strand at 467.875 kb on + strand at 467.891 kb on - strand at 467.931 kb on + strand at 467.939 kb on - strand at 467.939 kb on - strand at 467.984 kb on + strand at 467.984 kb on + strand at 468.030 kb on + strand at 468.064 kb on - strand, within Dshi_0483 at 468.077 kb on + strand, within Dshi_0483 at 468.090 kb on + strand, within Dshi_0483 at 468.098 kb on - strand, within Dshi_0483 at 468.098 kb on - strand, within Dshi_0483 at 468.165 kb on - strand, within Dshi_0483 at 468.201 kb on + strand, within Dshi_0483 at 468.202 kb on - strand, within Dshi_0483 at 468.232 kb on - strand, within Dshi_0483 at 468.307 kb on - strand, within Dshi_0483 at 468.327 kb on + strand, within Dshi_0483 at 468.351 kb on + strand, within Dshi_0483 at 468.371 kb on + strand, within Dshi_0483 at 468.381 kb on + strand, within Dshi_0483 at 468.381 kb on + strand, within Dshi_0483 at 468.389 kb on - strand, within Dshi_0483 at 468.389 kb on - strand, within Dshi_0483 at 468.494 kb on + strand, within Dshi_0483 at 468.525 kb on - strand, within Dshi_0483 at 468.549 kb on + strand, within Dshi_0483 at 468.598 kb on - strand, within Dshi_0483 at 468.598 kb on - strand, within Dshi_0483 at 468.619 kb on - strand, within Dshi_0483 at 468.663 kb on - strand, within Dshi_0483 at 468.668 kb on - strand, within Dshi_0483 at 468.676 kb on - strand, within Dshi_0483 at 468.698 kb on + strand, within Dshi_0483 at 468.699 kb on - strand, within Dshi_0483 at 468.699 kb on - strand, within Dshi_0483 at 468.706 kb on - strand, within Dshi_0483 at 468.741 kb on - strand, within Dshi_0483 at 468.755 kb on - strand, within Dshi_0483 at 468.757 kb on - strand, within Dshi_0483 at 468.761 kb on + strand, within Dshi_0483 at 468.762 kb on + strand, within Dshi_0483 at 468.768 kb on + strand, within Dshi_0483 at 468.770 kb on - strand, within Dshi_0483 at 468.770 kb on - strand, within Dshi_0483 at 468.778 kb on - strand, within Dshi_0483
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 466,331 + Dshi_0481 0.38 +0.4 466,334 - Dshi_0481 0.39 +1.7 466,351 - Dshi_0481 0.41 -0.8 466,433 - Dshi_0481 0.51 +1.4 466,486 - Dshi_0481 0.57 -1.5 466,583 - Dshi_0481 0.69 -3.1 466,583 - Dshi_0481 0.69 +1.3 466,583 - Dshi_0481 0.69 +1.0 466,637 + Dshi_0481 0.76 -1.0 466,637 + Dshi_0481 0.76 +1.1 466,674 - Dshi_0481 0.81 +1.7 466,702 + Dshi_0481 0.84 +0.2 466,702 + Dshi_0481 0.84 +0.4 466,703 - Dshi_0481 0.84 +0.4 466,710 - Dshi_0481 0.85 +0.0 466,710 - Dshi_0481 0.85 -1.0 466,731 + Dshi_0481 0.88 -0.8 466,743 + Dshi_0481 0.89 +1.2 466,743 + Dshi_0481 0.89 +0.4 466,743 + Dshi_0481 0.89 -0.7 466,743 + Dshi_0481 0.89 -0.8 466,743 + Dshi_0481 0.89 +0.5 466,743 + Dshi_0481 0.89 +0.4 466,743 + Dshi_0481 0.89 -0.2 466,743 + Dshi_0481 0.89 -0.1 466,743 + Dshi_0481 0.89 +0.1 466,743 + Dshi_0481 0.89 +0.7 466,751 - -0.5 466,751 - +0.3 466,751 - -0.5 466,751 - -0.9 466,763 - +1.0 466,763 - -0.0 466,786 + +0.4 466,799 - -1.5 466,799 - +0.1 466,819 - -0.5 466,854 + +1.0 466,856 + -0.7 466,864 - -1.5 466,891 + -1.1 466,894 - -0.8 466,963 + -0.8 466,963 + -0.8 466,963 + -2.5 466,963 + +0.2 466,971 - -0.4 466,971 - -0.7 466,971 - -0.3 466,986 + +1.7 467,017 + +0.2 467,025 - -0.4 467,025 - -0.1 467,045 + +0.6 467,059 + +0.8 467,159 + -0.1 467,169 + +0.3 467,169 + -1.4 467,169 + +0.5 467,169 + -0.7 467,169 + +1.1 467,177 - +1.2 467,177 - +1.0 467,211 - -0.7 467,217 - -0.8 467,252 + -0.3 467,252 + +1.2 467,253 + +1.0 467,253 + -0.5 467,271 + -1.8 467,271 + -0.0 467,286 + -1.4 467,294 - -0.4 467,334 - -0.0 467,346 + +0.8 467,351 + Dshi_0482 0.11 +0.0 467,354 - Dshi_0482 0.11 +0.7 467,356 + Dshi_0482 0.12 -1.7 467,356 + Dshi_0482 0.12 -0.3 467,356 + Dshi_0482 0.12 +0.3 467,361 + Dshi_0482 0.13 +0.2 467,364 - Dshi_0482 0.13 -0.1 467,393 + Dshi_0482 0.19 -0.6 467,393 + Dshi_0482 0.19 -0.3 467,393 + Dshi_0482 0.19 -0.4 467,393 + Dshi_0482 0.19 +0.6 467,393 + Dshi_0482 0.19 +0.4 467,401 - Dshi_0482 0.21 +0.1 467,401 - Dshi_0482 0.21 -0.4 467,401 - Dshi_0482 0.21 +0.5 467,401 - Dshi_0482 0.21 -0.2 467,401 - Dshi_0482 0.21 -0.3 467,401 - Dshi_0482 0.21 -0.0 467,403 + Dshi_0482 0.21 -0.8 467,411 - Dshi_0482 0.23 +3.9 467,411 - Dshi_0482 0.23 +1.0 467,427 + Dshi_0482 0.26 -0.6 467,427 + Dshi_0482 0.26 +1.0 467,427 + Dshi_0482 0.26 -1.5 467,435 - Dshi_0482 0.28 +0.5 467,435 - Dshi_0482 0.28 +0.2 467,435 - Dshi_0482 0.28 +0.0 467,452 + Dshi_0482 0.31 +0.1 467,453 - Dshi_0482 0.32 -0.9 467,482 + Dshi_0482 0.38 +0.9 467,482 + Dshi_0482 0.38 +0.4 467,482 + Dshi_0482 0.38 -0.6 467,482 + Dshi_0482 0.38 +4.2 467,490 - Dshi_0482 0.39 -2.7 467,495 + Dshi_0482 0.40 -1.1 467,495 + Dshi_0482 0.40 +0.3 467,500 + Dshi_0482 0.41 +0.8 467,587 - Dshi_0482 0.59 +0.6 467,589 + Dshi_0482 0.60 +0.2 467,589 + Dshi_0482 0.60 -0.9 467,597 + Dshi_0482 0.61 -0.4 467,597 - Dshi_0482 0.61 -0.6 467,597 - Dshi_0482 0.61 -0.4 467,597 - Dshi_0482 0.61 -0.3 467,603 + Dshi_0482 0.63 -2.1 467,634 - Dshi_0482 0.69 +0.2 467,636 + Dshi_0482 0.69 +0.5 467,659 - Dshi_0482 0.74 +1.0 467,661 + Dshi_0482 0.74 +0.5 467,670 - Dshi_0482 0.76 +0.0 467,704 + Dshi_0482 0.83 -0.6 467,704 + Dshi_0482 0.83 -0.1 467,709 + Dshi_0482 0.84 +0.8 467,711 - Dshi_0482 0.85 -0.1 467,711 - Dshi_0482 0.85 +0.4 467,717 - Dshi_0482 0.86 -2.5 467,723 + Dshi_0482 0.87 +1.2 467,723 + Dshi_0482 0.87 -1.3 467,750 + +1.9 467,758 - -0.9 467,758 - +0.8 467,820 - +0.6 467,835 - -0.5 467,835 - -0.7 467,835 - +0.1 467,835 - +0.4 467,850 + -1.2 467,858 - +1.2 467,864 + -0.9 467,864 + -2.1 467,872 - -0.4 467,875 + -0.6 467,891 - -0.8 467,931 + -1.3 467,939 - +3.4 467,939 - -0.5 467,984 + -0.2 467,984 + -1.2 468,030 + -0.2 468,064 - Dshi_0483 0.10 -0.9 468,077 + Dshi_0483 0.11 +4.1 468,090 + Dshi_0483 0.12 -0.4 468,098 - Dshi_0483 0.13 -0.5 468,098 - Dshi_0483 0.13 +0.1 468,165 - Dshi_0483 0.19 -1.0 468,201 + Dshi_0483 0.22 -0.2 468,202 - Dshi_0483 0.22 +2.2 468,232 - Dshi_0483 0.24 -1.1 468,307 - Dshi_0483 0.31 +0.3 468,327 + Dshi_0483 0.32 +0.7 468,351 + Dshi_0483 0.34 -1.2 468,371 + Dshi_0483 0.36 -0.1 468,381 + Dshi_0483 0.37 +0.8 468,381 + Dshi_0483 0.37 +1.7 468,389 - Dshi_0483 0.38 +1.1 468,389 - Dshi_0483 0.38 -0.4 468,494 + Dshi_0483 0.46 -0.8 468,525 - Dshi_0483 0.49 -0.3 468,549 + Dshi_0483 0.51 +0.2 468,598 - Dshi_0483 0.55 +0.8 468,598 - Dshi_0483 0.55 +0.1 468,619 - Dshi_0483 0.57 -1.2 468,663 - Dshi_0483 0.61 -0.7 468,668 - Dshi_0483 0.61 -0.3 468,676 - Dshi_0483 0.62 -0.6 468,698 + Dshi_0483 0.64 -0.4 468,699 - Dshi_0483 0.64 -0.4 468,699 - Dshi_0483 0.64 +1.2 468,706 - Dshi_0483 0.64 +0.7 468,741 - Dshi_0483 0.67 -0.3 468,755 - Dshi_0483 0.68 -1.1 468,757 - Dshi_0483 0.69 -0.2 468,761 + Dshi_0483 0.69 -0.3 468,762 + Dshi_0483 0.69 -0.7 468,768 + Dshi_0483 0.69 -0.5 468,770 - Dshi_0483 0.70 +1.2 468,770 - Dshi_0483 0.70 -0.5 468,778 - Dshi_0483 0.70 -0.7
Or see this region's nucleotide sequence