Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0464

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0462 and Dshi_0463 are separated by 172 nucleotidesDshi_0463 and Dshi_0464 are separated by 23 nucleotidesDshi_0464 and Dshi_0465 are separated by 45 nucleotidesDshi_0465 and Dshi_0466 are separated by 12 nucleotides Dshi_0462: Dshi_0462 - hypothetical protein (RefSeq), at 447,787 to 448,983 _0462 Dshi_0463: Dshi_0463 - transposase IS3/IS911 family protein (RefSeq), at 449,156 to 449,422 _0463 Dshi_0464: Dshi_0464 - Integrase catalytic region (RefSeq), at 449,446 to 450,267 _0464 Dshi_0465: Dshi_0465 - two component transcriptional regulator, LuxR family (RefSeq), at 450,313 to 451,032 _0465 Dshi_0466: Dshi_0466 - domain of unknown function DUF1745 (RefSeq), at 451,045 to 452,202 _0466 Position (kb) 449 450 451Strain fitness (log2 ratio) -2 -1 0 1 2 3at 448.455 kb on + strand, within Dshi_0462at 448.465 kb on + strand, within Dshi_0462at 448.478 kb on - strand, within Dshi_0462at 448.480 kb on + strand, within Dshi_0462at 448.516 kb on - strand, within Dshi_0462at 448.525 kb on - strand, within Dshi_0462at 448.547 kb on + strand, within Dshi_0462at 448.563 kb on - strand, within Dshi_0462at 448.572 kb on - strand, within Dshi_0462at 448.574 kb on - strand, within Dshi_0462at 448.579 kb on - strand, within Dshi_0462at 448.589 kb on - strand, within Dshi_0462at 448.589 kb on - strand, within Dshi_0462at 448.596 kb on - strand, within Dshi_0462at 448.611 kb on + strand, within Dshi_0462at 448.620 kb on - strand, within Dshi_0462at 448.640 kb on + strand, within Dshi_0462at 448.645 kb on + strand, within Dshi_0462at 448.652 kb on - strand, within Dshi_0462at 448.653 kb on - strand, within Dshi_0462at 448.744 kb on - strand, within Dshi_0462at 448.754 kb on - strand, within Dshi_0462at 448.760 kb on + strand, within Dshi_0462at 448.784 kb on + strand, within Dshi_0462at 448.845 kb on + strand, within Dshi_0462at 448.934 kb on + strandat 448.944 kb on + strandat 448.995 kb on + strandat 448.995 kb on + strandat 448.995 kb on - strandat 449.003 kb on - strandat 449.025 kb on + strandat 449.031 kb on - strandat 449.033 kb on - strandat 449.033 kb on - strandat 449.063 kb on - strandat 449.071 kb on + strandat 449.079 kb on - strandat 449.081 kb on + strandat 449.082 kb on + strandat 449.082 kb on + strandat 449.082 kb on + strandat 449.082 kb on + strandat 449.082 kb on + strandat 449.090 kb on - strandat 449.090 kb on - strandat 449.090 kb on - strandat 449.095 kb on - strandat 449.110 kb on - strandat 450.296 kb on + strandat 450.304 kb on - strandat 450.320 kb on + strandat 450.382 kb on + strandat 450.394 kb on - strand, within Dshi_0465at 450.427 kb on + strand, within Dshi_0465at 450.483 kb on - strand, within Dshi_0465at 450.672 kb on - strand, within Dshi_0465at 450.745 kb on + strand, within Dshi_0465at 450.910 kb on - strand, within Dshi_0465at 450.937 kb on - strand, within Dshi_0465at 450.942 kb on + strand, within Dshi_0465at 450.947 kb on + strand, within Dshi_0465at 450.975 kb on + strandat 451.018 kb on + strandat 451.057 kb on - strandat 451.105 kb on + strandat 451.105 kb on + strandat 451.110 kb on + strandat 451.118 kb on - strandat 451.162 kb on - strand, within Dshi_0466at 451.210 kb on + strand, within Dshi_0466at 451.210 kb on + strand, within Dshi_0466at 451.220 kb on - strand, within Dshi_0466at 451.222 kb on + strand, within Dshi_0466at 451.222 kb on + strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.240 kb on + strand, within Dshi_0466at 451.248 kb on - strand, within Dshi_0466at 451.250 kb on + strand, within Dshi_0466

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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448,455 + Dshi_0462 0.56 +0.9
448,465 + Dshi_0462 0.57 +0.4
448,478 - Dshi_0462 0.58 -1.2
448,480 + Dshi_0462 0.58 -1.3
448,516 - Dshi_0462 0.61 +0.5
448,525 - Dshi_0462 0.62 +0.1
448,547 + Dshi_0462 0.63 -0.8
448,563 - Dshi_0462 0.65 -0.6
448,572 - Dshi_0462 0.66 -0.2
448,574 - Dshi_0462 0.66 -1.9
448,579 - Dshi_0462 0.66 +0.1
448,589 - Dshi_0462 0.67 +0.8
448,589 - Dshi_0462 0.67 -1.9
448,596 - Dshi_0462 0.68 +1.8
448,611 + Dshi_0462 0.69 -1.1
448,620 - Dshi_0462 0.70 +0.9
448,640 + Dshi_0462 0.71 -0.0
448,645 + Dshi_0462 0.72 -0.4
448,652 - Dshi_0462 0.72 -1.7
448,653 - Dshi_0462 0.72 -2.5
448,744 - Dshi_0462 0.80 -0.5
448,754 - Dshi_0462 0.81 +0.8
448,760 + Dshi_0462 0.81 -0.8
448,784 + Dshi_0462 0.83 -0.9
448,845 + Dshi_0462 0.88 +0.1
448,934 + +0.4
448,944 + -0.0
448,995 + -1.2
448,995 + +3.7
448,995 - +0.2
449,003 - -0.3
449,025 + +1.2
449,031 - -1.1
449,033 - +0.4
449,033 - -1.1
449,063 - -1.1
449,071 + -0.7
449,079 - -0.1
449,081 + +0.2
449,082 + +2.8
449,082 + +0.4
449,082 + +2.0
449,082 + -1.2
449,082 + -0.4
449,090 - -0.2
449,090 - +1.9
449,090 - -0.9
449,095 - -0.8
449,110 - -1.1
450,296 + -0.9
450,304 - -0.6
450,320 + +2.2
450,382 + +0.3
450,394 - Dshi_0465 0.11 +1.5
450,427 + Dshi_0465 0.16 -0.7
450,483 - Dshi_0465 0.24 +0.3
450,672 - Dshi_0465 0.50 +0.5
450,745 + Dshi_0465 0.60 +1.3
450,910 - Dshi_0465 0.83 +0.8
450,937 - Dshi_0465 0.87 -1.1
450,942 + Dshi_0465 0.87 -0.1
450,947 + Dshi_0465 0.88 +1.8
450,975 + -0.1
451,018 + +0.0
451,057 - +0.8
451,105 + -0.8
451,105 + +0.3
451,110 + -1.1
451,118 - +0.2
451,162 - Dshi_0466 0.10 +2.2
451,210 + Dshi_0466 0.14 -0.1
451,210 + Dshi_0466 0.14 -0.6
451,220 - Dshi_0466 0.15 -0.0
451,222 + Dshi_0466 0.15 -1.0
451,222 + Dshi_0466 0.15 -0.5
451,230 - Dshi_0466 0.16 +1.3
451,230 - Dshi_0466 0.16 -0.8
451,230 - Dshi_0466 0.16 -0.8
451,230 - Dshi_0466 0.16 +0.3
451,230 - Dshi_0466 0.16 -0.1
451,230 - Dshi_0466 0.16 -2.1
451,230 - Dshi_0466 0.16 +0.5
451,230 - Dshi_0466 0.16 -0.1
451,240 + Dshi_0466 0.17 +3.6
451,248 - Dshi_0466 0.18 -0.2
451,250 + Dshi_0466 0.18 -0.2

Or see this region's nucleotide sequence