Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0462 and Dshi_0463 are separated by 172 nucleotides Dshi_0463 and Dshi_0464 are separated by 23 nucleotides Dshi_0464 and Dshi_0465 are separated by 45 nucleotides
Dshi_0462: Dshi_0462 - hypothetical protein (RefSeq), at 447,787 to 448,983
_0462
Dshi_0463: Dshi_0463 - transposase IS3/IS911 family protein (RefSeq), at 449,156 to 449,422
_0463
Dshi_0464: Dshi_0464 - Integrase catalytic region (RefSeq), at 449,446 to 450,267
_0464
Dshi_0465: Dshi_0465 - two component transcriptional regulator, LuxR family (RefSeq), at 450,313 to 451,032
_0465
Position (kb) 449
450 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 448.222 kb on + strand, within Dshi_0462 at 448.223 kb on + strand, within Dshi_0462 at 448.228 kb on + strand, within Dshi_0462 at 448.228 kb on + strand, within Dshi_0462 at 448.294 kb on - strand, within Dshi_0462 at 448.301 kb on + strand, within Dshi_0462 at 448.332 kb on + strand, within Dshi_0462 at 448.340 kb on + strand, within Dshi_0462 at 448.349 kb on - strand, within Dshi_0462 at 448.373 kb on + strand, within Dshi_0462 at 448.455 kb on + strand, within Dshi_0462 at 448.465 kb on + strand, within Dshi_0462 at 448.478 kb on - strand, within Dshi_0462 at 448.480 kb on + strand, within Dshi_0462 at 448.516 kb on - strand, within Dshi_0462 at 448.525 kb on - strand, within Dshi_0462 at 448.547 kb on + strand, within Dshi_0462 at 448.563 kb on - strand, within Dshi_0462 at 448.572 kb on - strand, within Dshi_0462 at 448.574 kb on - strand, within Dshi_0462 at 448.579 kb on - strand, within Dshi_0462 at 448.589 kb on - strand, within Dshi_0462 at 448.589 kb on - strand, within Dshi_0462 at 448.596 kb on - strand, within Dshi_0462 at 448.611 kb on + strand, within Dshi_0462 at 448.620 kb on - strand, within Dshi_0462 at 448.640 kb on + strand, within Dshi_0462 at 448.645 kb on + strand, within Dshi_0462 at 448.652 kb on - strand, within Dshi_0462 at 448.653 kb on - strand, within Dshi_0462 at 448.744 kb on - strand, within Dshi_0462 at 448.754 kb on - strand, within Dshi_0462 at 448.760 kb on + strand, within Dshi_0462 at 448.784 kb on + strand, within Dshi_0462 at 448.845 kb on + strand, within Dshi_0462 at 448.934 kb on + strand at 448.944 kb on + strand at 448.995 kb on + strand at 448.995 kb on + strand at 448.995 kb on - strand at 449.003 kb on - strand at 449.025 kb on + strand at 449.031 kb on - strand at 449.033 kb on - strand at 449.033 kb on - strand at 449.063 kb on - strand at 449.071 kb on + strand at 449.079 kb on - strand at 449.081 kb on + strand at 449.082 kb on + strand at 449.082 kb on + strand at 449.082 kb on + strand at 449.082 kb on + strand at 449.082 kb on + strand at 449.090 kb on - strand at 449.090 kb on - strand at 449.090 kb on - strand at 449.095 kb on - strand at 449.110 kb on - strand at 450.296 kb on + strand at 450.304 kb on - strand at 450.320 kb on + strand at 450.382 kb on + strand at 450.394 kb on - strand, within Dshi_0465
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 448,222 + Dshi_0462 0.36 +0.1 448,223 + Dshi_0462 0.36 -0.6 448,228 + Dshi_0462 0.37 -0.4 448,228 + Dshi_0462 0.37 -0.8 448,294 - Dshi_0462 0.42 -0.6 448,301 + Dshi_0462 0.43 +0.2 448,332 + Dshi_0462 0.46 -0.4 448,340 + Dshi_0462 0.46 -3.4 448,349 - Dshi_0462 0.47 -0.1 448,373 + Dshi_0462 0.49 -0.2 448,455 + Dshi_0462 0.56 +0.9 448,465 + Dshi_0462 0.57 +0.4 448,478 - Dshi_0462 0.58 -1.2 448,480 + Dshi_0462 0.58 -1.3 448,516 - Dshi_0462 0.61 +0.5 448,525 - Dshi_0462 0.62 +0.1 448,547 + Dshi_0462 0.63 -0.8 448,563 - Dshi_0462 0.65 -0.6 448,572 - Dshi_0462 0.66 -0.2 448,574 - Dshi_0462 0.66 -1.9 448,579 - Dshi_0462 0.66 +0.1 448,589 - Dshi_0462 0.67 +0.8 448,589 - Dshi_0462 0.67 -1.9 448,596 - Dshi_0462 0.68 +1.8 448,611 + Dshi_0462 0.69 -1.1 448,620 - Dshi_0462 0.70 +0.9 448,640 + Dshi_0462 0.71 -0.0 448,645 + Dshi_0462 0.72 -0.4 448,652 - Dshi_0462 0.72 -1.7 448,653 - Dshi_0462 0.72 -2.5 448,744 - Dshi_0462 0.80 -0.5 448,754 - Dshi_0462 0.81 +0.8 448,760 + Dshi_0462 0.81 -0.8 448,784 + Dshi_0462 0.83 -0.9 448,845 + Dshi_0462 0.88 +0.1 448,934 + +0.4 448,944 + -0.0 448,995 + -1.2 448,995 + +3.7 448,995 - +0.2 449,003 - -0.3 449,025 + +1.2 449,031 - -1.1 449,033 - +0.4 449,033 - -1.1 449,063 - -1.1 449,071 + -0.7 449,079 - -0.1 449,081 + +0.2 449,082 + +2.8 449,082 + +0.4 449,082 + +2.0 449,082 + -1.2 449,082 + -0.4 449,090 - -0.2 449,090 - +1.9 449,090 - -0.9 449,095 - -0.8 449,110 - -1.1 450,296 + -0.9 450,304 - -0.6 450,320 + +2.2 450,382 + +0.3 450,394 - Dshi_0465 0.11 +1.5
Or see this region's nucleotide sequence