Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0390 and Dshi_6006 are separated by 753 nucleotides Dshi_6006 and Dshi_R0007 are separated by 276 nucleotides Dshi_R0007 and Dshi_R0008 are separated by 175 nucleotides
Dshi_0390: Dshi_0390 - periplasmic binding protein/LacI transcriptional regulator (RefSeq), at 371,715 to 372,728
_0390
Dshi_6006: Dshi_6006 - 16SrRNA (RefSeq), at 373,482 to 374,943
_6006
Dshi_R0007: Dshi_R0007 - tRNA-Ile (RefSeq), at 375,220 to 375,296
_R0007
Dshi_R0008: Dshi_R0008 - tRNA-Ala (RefSeq), at 375,472 to 375,547
_R0008
Position (kb) 373
374
375 Strain fitness (log2 ratio) -1
0
1 at 372.583 kb on + strand, within Dshi_0390 at 372.591 kb on + strand, within Dshi_0390 at 372.591 kb on - strand, within Dshi_0390 at 372.642 kb on - strand at 372.696 kb on + strand at 372.696 kb on + strand at 372.696 kb on + strand at 372.696 kb on + strand at 372.711 kb on - strand at 372.753 kb on + strand at 372.785 kb on + strand at 372.892 kb on + strand at 372.893 kb on - strand at 372.914 kb on - strand at 372.931 kb on + strand at 372.976 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 372,583 + Dshi_0390 0.86 -0.0 372,591 + Dshi_0390 0.86 +0.2 372,591 - Dshi_0390 0.86 -0.4 372,642 - -0.3 372,696 + -1.3 372,696 + -1.3 372,696 + +0.5 372,696 + +0.1 372,711 - -0.9 372,753 + -1.0 372,785 + -0.6 372,892 + -0.5 372,893 - -0.2 372,914 - -1.6 372,931 + +0.8 372,976 + +1.5
Or see this region's nucleotide sequence