Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0359 and Dshi_0360 are separated by 53 nucleotides Dshi_0360 and Dshi_0361 are separated by 83 nucleotides Dshi_0361 and Dshi_0362 overlap by 4 nucleotides
Dshi_0359: Dshi_0359 - lipoprotein signal peptidase (RefSeq), at 342,204 to 342,680
_0359
Dshi_0360: Dshi_0360 - hypothetical protein (RefSeq), at 342,734 to 343,279
_0360
Dshi_0361: Dshi_0361 - peptidase M16 domain protein (RefSeq), at 343,363 to 344,724
_0361
Dshi_0362: Dshi_0362 - peptidase M16 domain protein (RefSeq), at 344,721 to 346,034
_0362
Position (kb) 343
344
345 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 342.427 kb on + strand, within Dshi_0359 at 342.448 kb on - strand, within Dshi_0359 at 342.571 kb on + strand, within Dshi_0359 at 342.630 kb on + strand, within Dshi_0359 at 342.645 kb on - strand at 342.843 kb on + strand, within Dshi_0360 at 342.932 kb on - strand, within Dshi_0360 at 343.039 kb on - strand, within Dshi_0360 at 343.045 kb on + strand, within Dshi_0360 at 343.264 kb on + strand at 343.307 kb on + strand at 343.333 kb on + strand at 343.333 kb on + strand at 343.333 kb on + strand at 343.434 kb on - strand at 343.454 kb on + strand at 343.577 kb on - strand, within Dshi_0361 at 343.602 kb on + strand, within Dshi_0361 at 343.656 kb on - strand, within Dshi_0361 at 343.929 kb on + strand, within Dshi_0361 at 344.081 kb on + strand, within Dshi_0361 at 344.081 kb on + strand, within Dshi_0361 at 344.089 kb on - strand, within Dshi_0361 at 344.089 kb on - strand, within Dshi_0361 at 344.099 kb on - strand, within Dshi_0361 at 344.169 kb on + strand, within Dshi_0361 at 344.169 kb on + strand, within Dshi_0361 at 344.228 kb on - strand, within Dshi_0361 at 344.273 kb on - strand, within Dshi_0361 at 344.320 kb on + strand, within Dshi_0361 at 344.320 kb on + strand, within Dshi_0361 at 344.328 kb on - strand, within Dshi_0361 at 344.366 kb on - strand, within Dshi_0361 at 344.519 kb on - strand, within Dshi_0361 at 344.526 kb on - strand, within Dshi_0361 at 344.565 kb on + strand, within Dshi_0361 at 344.575 kb on - strand, within Dshi_0361 at 344.575 kb on - strand, within Dshi_0361 at 344.575 kb on - strand, within Dshi_0361 at 344.582 kb on + strand, within Dshi_0361 at 344.595 kb on + strand at 344.595 kb on + strand at 344.600 kb on + strand at 344.733 kb on - strand at 344.779 kb on - strand at 344.837 kb on + strand at 344.872 kb on + strand, within Dshi_0362 at 345.236 kb on + strand, within Dshi_0362 at 345.382 kb on - strand, within Dshi_0362 at 345.440 kb on + strand, within Dshi_0362 at 345.463 kb on + strand, within Dshi_0362 at 345.634 kb on + strand, within Dshi_0362
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 342,427 + Dshi_0359 0.47 +1.6 342,448 - Dshi_0359 0.51 -0.0 342,571 + Dshi_0359 0.77 +0.0 342,630 + Dshi_0359 0.89 -1.6 342,645 - -0.6 342,843 + Dshi_0360 0.20 +0.4 342,932 - Dshi_0360 0.36 -1.1 343,039 - Dshi_0360 0.56 -1.0 343,045 + Dshi_0360 0.57 -1.7 343,264 + -0.7 343,307 + -0.6 343,333 + -1.9 343,333 + +2.4 343,333 + -0.4 343,434 - -1.6 343,454 + -1.5 343,577 - Dshi_0361 0.16 +0.4 343,602 + Dshi_0361 0.18 +3.0 343,656 - Dshi_0361 0.22 +2.4 343,929 + Dshi_0361 0.42 -1.4 344,081 + Dshi_0361 0.53 -1.1 344,081 + Dshi_0361 0.53 -0.9 344,089 - Dshi_0361 0.53 +2.4 344,089 - Dshi_0361 0.53 +0.4 344,099 - Dshi_0361 0.54 +0.4 344,169 + Dshi_0361 0.59 +0.1 344,169 + Dshi_0361 0.59 -0.7 344,228 - Dshi_0361 0.64 -0.0 344,273 - Dshi_0361 0.67 -0.0 344,320 + Dshi_0361 0.70 +3.0 344,320 + Dshi_0361 0.70 -0.7 344,328 - Dshi_0361 0.71 +0.1 344,366 - Dshi_0361 0.74 +1.4 344,519 - Dshi_0361 0.85 -2.2 344,526 - Dshi_0361 0.85 +2.8 344,565 + Dshi_0361 0.88 +1.9 344,575 - Dshi_0361 0.89 +1.4 344,575 - Dshi_0361 0.89 +1.8 344,575 - Dshi_0361 0.89 -0.3 344,582 + Dshi_0361 0.90 -0.8 344,595 + +0.7 344,595 + -0.2 344,600 + -0.6 344,733 - +1.8 344,779 - +0.1 344,837 + -0.2 344,872 + Dshi_0362 0.11 -0.9 345,236 + Dshi_0362 0.39 +0.1 345,382 - Dshi_0362 0.50 -1.6 345,440 + Dshi_0362 0.55 -0.6 345,463 + Dshi_0362 0.56 +1.3 345,634 + Dshi_0362 0.69 -0.6
Or see this region's nucleotide sequence