Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0309

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0307 and Dshi_0308 are separated by 15 nucleotidesDshi_0308 and Dshi_0309 are separated by 102 nucleotidesDshi_0309 and Dshi_0310 are separated by 118 nucleotidesDshi_0310 and Dshi_0311 are separated by 342 nucleotides Dshi_0307: Dshi_0307 - ribosomal protein S13 (RefSeq), at 297,504 to 297,947 _0307 Dshi_0308: Dshi_0308 - ribosomal protein S11 (RefSeq), at 297,963 to 298,352 _0308 Dshi_0309: Dshi_0309 - DNA-directed RNA polymerase, alpha subunit (RefSeq), at 298,455 to 299,486 _0309 Dshi_0310: Dshi_0310 - ribosomal protein L17 (RefSeq), at 299,605 to 300,021 _0310 Dshi_0311: Dshi_0311 - transcriptional regulator, LuxR family (RefSeq), at 300,364 to 300,975 _0311 Position (kb) 298 299 300Strain fitness (log2 ratio) -3 -2 -1 0 1at 300.171 kb on + strandat 300.173 kb on + strandat 300.238 kb on + strandat 300.336 kb on - strandat 300.368 kb on + strandat 300.388 kb on - strandat 300.445 kb on - strand, within Dshi_0311at 300.463 kb on + strand, within Dshi_0311at 300.484 kb on + strand, within Dshi_0311

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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300,171 + -1.0
300,173 + -0.2
300,238 + -2.1
300,336 - -0.7
300,368 + -3.3
300,388 - -0.2
300,445 - Dshi_0311 0.13 +1.1
300,463 + Dshi_0311 0.16 +1.2
300,484 + Dshi_0311 0.20 -1.7

Or see this region's nucleotide sequence