Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0292 and Dshi_0293 are separated by 87 nucleotides Dshi_0293 and Dshi_0294 are separated by 12 nucleotides Dshi_0294 and Dshi_0295 are separated by 73 nucleotides Dshi_0295 and Dshi_0296 overlap by 1 nucleotides Dshi_0296 and Dshi_0297 overlap by 1 nucleotides
Dshi_0292: Dshi_0292 - hypothetical protein (RefSeq), at 289,461 to 290,186
_0292
Dshi_0293: Dshi_0293 - ribosomal protein L29 (RefSeq), at 290,274 to 290,480
_0293
Dshi_0294: Dshi_0294 - ribosomal protein S17 (RefSeq), at 290,493 to 290,723
_0294
Dshi_0295: Dshi_0295 - ribosomal protein L14 (RefSeq), at 290,797 to 291,165
_0295
Dshi_0296: Dshi_0296 - ribosomal protein L24 (RefSeq), at 291,165 to 291,470
_0296
Dshi_0297: Dshi_0297 - ribosomal protein L5 (RefSeq), at 291,470 to 292,033
_0297
Position (kb) 290
291 Strain fitness (log2 ratio) -2
-1
0
1
2 at 289.523 kb on + strand at 289.548 kb on - strand, within Dshi_0292 at 289.580 kb on + strand, within Dshi_0292 at 289.580 kb on + strand, within Dshi_0292 at 289.609 kb on + strand, within Dshi_0292 at 289.645 kb on + strand, within Dshi_0292 at 289.653 kb on - strand, within Dshi_0292 at 289.687 kb on - strand, within Dshi_0292 at 289.700 kb on - strand, within Dshi_0292 at 289.890 kb on - strand, within Dshi_0292 at 289.895 kb on - strand, within Dshi_0292 at 289.937 kb on + strand, within Dshi_0292 at 289.942 kb on + strand, within Dshi_0292 at 290.006 kb on + strand, within Dshi_0292 at 290.006 kb on + strand, within Dshi_0292 at 290.006 kb on + strand, within Dshi_0292 at 290.018 kb on + strand, within Dshi_0292 at 290.041 kb on + strand, within Dshi_0292 at 290.041 kb on + strand, within Dshi_0292 at 290.041 kb on + strand, within Dshi_0292
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 289,523 + +0.8 289,548 - Dshi_0292 0.12 -2.5 289,580 + Dshi_0292 0.16 -1.5 289,580 + Dshi_0292 0.16 -0.1 289,609 + Dshi_0292 0.20 -0.6 289,645 + Dshi_0292 0.25 -1.5 289,653 - Dshi_0292 0.26 -0.4 289,687 - Dshi_0292 0.31 +0.6 289,700 - Dshi_0292 0.33 +1.9 289,890 - Dshi_0292 0.59 +0.7 289,895 - Dshi_0292 0.60 -0.5 289,937 + Dshi_0292 0.66 +0.3 289,942 + Dshi_0292 0.66 -1.5 290,006 + Dshi_0292 0.75 -1.6 290,006 + Dshi_0292 0.75 -1.6 290,006 + Dshi_0292 0.75 -1.8 290,018 + Dshi_0292 0.77 -0.0 290,041 + Dshi_0292 0.80 -0.9 290,041 + Dshi_0292 0.80 -2.0 290,041 + Dshi_0292 0.80 +0.5
Or see this region's nucleotide sequence