Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0175 and Dshi_0176 are separated by 123 nucleotides Dshi_0176 and Dshi_0177 are separated by 60 nucleotides Dshi_0177 and Dshi_0178 are separated by 3 nucleotides
Dshi_0175: Dshi_0175 - precorrin-3B C17-methyltransferase (RefSeq), at 178,678 to 180,483
_0175
Dshi_0176: Dshi_0176 - precorrin-4 C11-methyltransferase (RefSeq), at 180,607 to 181,383
_0176
Dshi_0177: Dshi_0177 - hypothetical protein (RefSeq), at 181,444 to 181,797
_0177
Dshi_0178: Dshi_0178 - aminotransferase class I and II (RefSeq), at 181,801 to 182,973
_0178
Position (kb) 181
182 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 180.583 kb on - strand at 180.583 kb on - strand at 181.416 kb on + strand at 181.696 kb on - strand, within Dshi_0177 at 181.908 kb on + strand at 181.916 kb on - strand at 181.979 kb on - strand, within Dshi_0178 at 182.002 kb on + strand, within Dshi_0178 at 182.002 kb on + strand, within Dshi_0178 at 182.351 kb on - strand, within Dshi_0178 at 182.361 kb on - strand, within Dshi_0178 at 182.438 kb on + strand, within Dshi_0178 at 182.438 kb on + strand, within Dshi_0178 at 182.530 kb on + strand, within Dshi_0178 at 182.539 kb on - strand at 182.539 kb on - strand, within Dshi_0178 at 182.563 kb on + strand, within Dshi_0178 at 182.609 kb on + strand, within Dshi_0178 at 182.668 kb on + strand, within Dshi_0178 at 182.730 kb on - strand, within Dshi_0178 at 182.770 kb on + strand, within Dshi_0178
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 180,583 - +2.6 180,583 - +0.6 181,416 + +1.6 181,696 - Dshi_0177 0.71 +3.2 181,908 + -1.7 181,916 - +0.0 181,979 - Dshi_0178 0.15 -1.2 182,002 + Dshi_0178 0.17 +1.3 182,002 + Dshi_0178 0.17 +0.6 182,351 - Dshi_0178 0.47 +0.2 182,361 - Dshi_0178 0.48 -2.6 182,438 + Dshi_0178 0.54 -1.5 182,438 + Dshi_0178 0.54 -1.6 182,530 + Dshi_0178 0.62 -2.0 182,539 - -0.4 182,539 - Dshi_0178 0.63 -1.4 182,563 + Dshi_0178 0.65 -1.3 182,609 + Dshi_0178 0.69 -1.7 182,668 + Dshi_0178 0.74 -0.7 182,730 - Dshi_0178 0.79 -1.7 182,770 + Dshi_0178 0.83 -0.6
Or see this region's nucleotide sequence