Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt 11772377 and 11487623 are separated by 0 nucleotides 11487623 and 11629986 overlap by 30 nucleotides 11629986 and 11772378 overlap by 30 nucleotides 11772378 and 11487624 are separated by 0 nucleotides 11487624 and 11629987 overlap by 36 nucleotides 11629987 and 11772379 overlap by 36 nucleotides 11772379 and 11487625 are separated by 0 nucleotides 11487625 and 11629988 overlap by 29 nucleotides 11629988 and 11772380 overlap by 29 nucleotides 11772380 and 11487626 are separated by 0 nucleotides 11487626 and 11629989 overlap by 36 nucleotides 11629989 and 11772381 overlap by 36 nucleotides 11772381 and 11487627 are separated by 0 nucleotides 11487627 and 11629990 overlap by 30 nucleotides 11629990 and 11772382 overlap by 30 nucleotides 11772382 and 11487628 are separated by 0 nucleotides 11487628 and 11629991 overlap by 36 nucleotides 11629991 and 11772383 overlap by 36 nucleotides 11772383 and 11487629 are separated by 0 nucleotides 11487629 and 11629992 overlap by 30 nucleotides 11629992 and 11772384 overlap by 30 nucleotides 11772384 and 11487630 are separated by 0 nucleotides 11487630 and 11629993 overlap by 36 nucleotides 11629993 and 11772385 overlap by 36 nucleotides 11772385 and 11487631 are separated by 0 nucleotides 11487631 and 11629994 overlap by 29 nucleotides 11629994 and 11772386 overlap by 29 nucleotides 11772386 and 11487632 are separated by 0 nucleotides 11487632 and 11629995 overlap by 36 nucleotides 11629995 and 11772387 overlap by 36 nucleotides 11772387 and 11487633 are separated by 0 nucleotides 11487633 and 11629996 overlap by 30 nucleotides 11629996 and 11772388 overlap by 30 nucleotides 11772388 and 11487634 are separated by 0 nucleotides 11487634 and 11629997 overlap by 36 nucleotides 11629997 and 11772389 overlap by 36 nucleotides 11772389 and 11487635 are separated by 0 nucleotides 11487635 and 11629998 overlap by 30 nucleotides 11629998 and 11772390 overlap by 30 nucleotides 11772390 and 11487636 are separated by 0 nucleotides 11487636 and 11629999 overlap by 36 nucleotides 11629999 and 11772391 overlap by 36 nucleotides 11772391 and 11487637 are separated by 0 nucleotides 11487637 and 11630000 overlap by 30 nucleotides 11630000 and 11772392 overlap by 30 nucleotides 11772392 and 11487638 are separated by 0 nucleotides 11487638 and 11630001 overlap by 36 nucleotides 11630001 and 11772393 overlap by 36 nucleotides 11772393 and 11487639 are separated by 0 nucleotides 11487639 and 11630002 overlap by 30 nucleotides 11630002 and 11772394 overlap by 30 nucleotides 11772394 and 11487640 are separated by 0 nucleotides 11487640 and 11630003 overlap by 36 nucleotides 11630003 and 11772395 overlap by 36 nucleotides 11772395 and 11487641 are separated by 0 nucleotides 11487641 and 11630004 overlap by 30 nucleotides 11630004 and 11772396 overlap by 30 nucleotides 11772396 and 11487642 are separated by 0 nucleotides 11487642 and 11630005 overlap by 36 nucleotides 11630005 and 11772397 overlap by 36 nucleotides 11772397 and 11487643 are separated by 0 nucleotides 11487643 and 11630006 overlap by 30 nucleotides 11630006 and 11772398 overlap by 30 nucleotides 11772398 and 11487644 are separated by 0 nucleotides 11487644 and 11630007 overlap by 36 nucleotides 11630007 and 11772399 overlap by 36 nucleotides 11772399 and 11487645 are separated by 0 nucleotides 11487645 and 11630008 overlap by 30 nucleotides 11630008 and 11772400 overlap by 30 nucleotides 11772400 and 11487646 are separated by 0 nucleotides 11487646 and 11630009 overlap by 36 nucleotides 11630009 and 11772401 overlap by 36 nucleotides 11772401 and 11487647 are separated by 0 nucleotides 11487647 and 11630010 overlap by 29 nucleotides 11630010 and 11772402 overlap by 29 nucleotides 11772402 and 11487648 are separated by 0 nucleotides 11487648 and 11630011 overlap by 36 nucleotides 11630011 and 11772403 overlap by 36 nucleotides 11772403 and 11487649 are separated by 0 nucleotides 11487649 and 11630012 overlap by 30 nucleotides 11630012 and 11772404 overlap by 30 nucleotides 11772404 and 11487650 are separated by 0 nucleotides 11487650 and 11630013 overlap by 36 nucleotides 11630013 and 11772405 overlap by 36 nucleotides 11772405 and 11487651 are separated by 0 nucleotides 11487651 and 11630014 overlap by 30 nucleotides 11630014 and 11772406 overlap by 30 nucleotides 11772406 and 11487652 are separated by 0 nucleotides 11487652 and 11630015 overlap by 36 nucleotides 11630015 and 11772407 overlap by 36 nucleotides 11772407 and 11487653 are separated by 0 nucleotides 11487653 and 11630016 overlap by 30 nucleotides 11630016 and 11772408 overlap by 30 nucleotides 11772408 and 11487654 are separated by 0 nucleotides 11487654 and 11630017 overlap by 15 nucleotides 11630017 and 11772409 overlap by 15 nucleotides 11772409 and Dshi_0403 are separated by 299 nucleotides Dshi_0403 and Dshi_0404 are separated by 23 nucleotides
11487622 - no description, at 396,622 to 396,657
11487622
11629985 - no description, at 396,622 to 396,657
11629985
11772377 - no description, at 396,622 to 396,657
11772377
11487623 - no description, at 396,658 to 396,687
11487623
11629986 - no description, at 396,658 to 396,687
11629986
11772378 - no description, at 396,658 to 396,687
11772378
11487624 - no description, at 396,688 to 396,723
11487624
11629987 - no description, at 396,688 to 396,723
11629987
11772379 - no description, at 396,688 to 396,723
11772379
11487625 - no description, at 396,724 to 396,752
11487625
11629988 - no description, at 396,724 to 396,752
11629988
11772380 - no description, at 396,724 to 396,752
11772380
11487626 - no description, at 396,753 to 396,788
11487626
11629989 - no description, at 396,753 to 396,788
11629989
11772381 - no description, at 396,753 to 396,788
11772381
11487627 - no description, at 396,789 to 396,818
11487627
11629990 - no description, at 396,789 to 396,818
11629990
11772382 - no description, at 396,789 to 396,818
11772382
11487628 - no description, at 396,819 to 396,854
11487628
11629991 - no description, at 396,819 to 396,854
11629991
11772383 - no description, at 396,819 to 396,854
11772383
11487629 - no description, at 396,855 to 396,884
11487629
11629992 - no description, at 396,855 to 396,884
11629992
11772384 - no description, at 396,855 to 396,884
11772384
11487630 - no description, at 396,885 to 396,920
11487630
11629993 - no description, at 396,885 to 396,920
11629993
11772385 - no description, at 396,885 to 396,920
11772385
11487631 - no description, at 396,921 to 396,949
11487631
11629994 - no description, at 396,921 to 396,949
11629994
11772386 - no description, at 396,921 to 396,949
11772386
11487632 - no description, at 396,950 to 396,985
11487632
11629995 - no description, at 396,950 to 396,985
11629995
11772387 - no description, at 396,950 to 396,985
11772387
11487633 - no description, at 396,986 to 397,015
11487633
11629996 - no description, at 396,986 to 397,015
11629996
11772388 - no description, at 396,986 to 397,015
11772388
11487634 - no description, at 397,016 to 397,051
11487634
11629997 - no description, at 397,016 to 397,051
11629997
11772389 - no description, at 397,016 to 397,051
11772389
11487635 - no description, at 397,052 to 397,081
11487635
11629998 - no description, at 397,052 to 397,081
11629998
11772390 - no description, at 397,052 to 397,081
11772390
11487636 - no description, at 397,082 to 397,117
11487636
11629999 - no description, at 397,082 to 397,117
11629999
11772391 - no description, at 397,082 to 397,117
11772391
11487637 - no description, at 397,118 to 397,147
11487637
11630000 - no description, at 397,118 to 397,147
11630000
11772392 - no description, at 397,118 to 397,147
11772392
11487638 - no description, at 397,148 to 397,183
11487638
11630001 - no description, at 397,148 to 397,183
11630001
11772393 - no description, at 397,148 to 397,183
11772393
11487639 - no description, at 397,184 to 397,213
11487639
11630002 - no description, at 397,184 to 397,213
11630002
11772394 - no description, at 397,184 to 397,213
11772394
11487640 - no description, at 397,214 to 397,249
11487640
11630003 - no description, at 397,214 to 397,249
11630003
11772395 - no description, at 397,214 to 397,249
11772395
11487641 - no description, at 397,250 to 397,279
11487641
11630004 - no description, at 397,250 to 397,279
11630004
11772396 - no description, at 397,250 to 397,279
11772396
11487642 - no description, at 397,280 to 397,315
11487642
11630005 - no description, at 397,280 to 397,315
11630005
11772397 - no description, at 397,280 to 397,315
11772397
11487643 - no description, at 397,316 to 397,345
11487643
11630006 - no description, at 397,316 to 397,345
11630006
11772398 - no description, at 397,316 to 397,345
11772398
11487644 - no description, at 397,346 to 397,381
11487644
11630007 - no description, at 397,346 to 397,381
11630007
11772399 - no description, at 397,346 to 397,381
11772399
11487645 - no description, at 397,382 to 397,411
11487645
11630008 - no description, at 397,382 to 397,411
11630008
11772400 - no description, at 397,382 to 397,411
11772400
11487646 - no description, at 397,412 to 397,447
11487646
11630009 - no description, at 397,412 to 397,447
11630009
11772401 - no description, at 397,412 to 397,447
11772401
11487647 - no description, at 397,448 to 397,476
11487647
11630010 - no description, at 397,448 to 397,476
11630010
11772402 - no description, at 397,448 to 397,476
11772402
11487648 - no description, at 397,477 to 397,512
11487648
11630011 - no description, at 397,477 to 397,512
11630011
11772403 - no description, at 397,477 to 397,512
11772403
11487649 - no description, at 397,513 to 397,542
11487649
11630012 - no description, at 397,513 to 397,542
11630012
11772404 - no description, at 397,513 to 397,542
11772404
11487650 - no description, at 397,543 to 397,578
11487650
11630013 - no description, at 397,543 to 397,578
11630013
11772405 - no description, at 397,543 to 397,578
11772405
11487651 - no description, at 397,579 to 397,608
11487651
11630014 - no description, at 397,579 to 397,608
11630014
11772406 - no description, at 397,579 to 397,608
11772406
11487652 - no description, at 397,609 to 397,644
11487652
11630015 - no description, at 397,609 to 397,644
11630015
11772407 - no description, at 397,609 to 397,644
11772407
11487653 - no description, at 397,645 to 397,674
11487653
11630016 - no description, at 397,645 to 397,674
11630016
11772408 - no description, at 397,645 to 397,674
11772408
11487654 - no description, at 397,675 to 397,689
11487654
11630017 - no description, at 397,675 to 397,689
11630017
11772409 - no description, at 397,675 to 397,689
11772409
Dshi_0403: Dshi_0403 - transposase IS3/IS911 family protein (RefSeq), at 397,989 to 398,255
_0403
Dshi_0404: Dshi_0404 - Integrase catalytic region (RefSeq), at 398,279 to 399,088
_0404
Position (kb) 397
398 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 396.658 kb on + strand at 396.666 kb on - strand at 396.679 kb on - strand at 396.687 kb on + strand at 396.690 kb on - strand at 396.690 kb on - strand at 396.712 kb on - strand at 396.723 kb on - strand at 396.741 kb on - strand at 396.752 kb on + strand at 396.762 kb on + strand at 396.762 kb on + strand at 396.770 kb on - strand at 396.770 kb on - strand at 396.776 kb on - strand at 396.780 kb on + strand at 396.796 kb on + strand at 396.801 kb on + strand at 396.809 kb on - strand at 396.809 kb on - strand at 396.823 kb on - strand at 396.828 kb on + strand at 396.828 kb on + strand at 396.836 kb on - strand at 396.864 kb on + strand at 396.864 kb on + strand at 396.864 kb on + strand at 396.869 kb on + strand at 396.876 kb on + strand at 396.877 kb on - strand at 396.884 kb on + strand at 396.884 kb on - strand at 396.889 kb on - strand at 396.892 kb on - strand at 396.894 kb on + strand at 396.894 kb on - strand at 396.902 kb on - strand at 396.920 kb on + strand at 396.930 kb on + strand at 396.930 kb on + strand at 396.932 kb on + strand at 396.932 kb on + strand at 396.932 kb on + strand at 396.932 kb on + strand at 396.932 kb on + strand at 396.932 kb on + strand at 396.939 kb on - strand at 396.940 kb on - strand at 396.940 kb on - strand at 396.940 kb on - strand at 396.940 kb on - strand at 396.959 kb on + strand at 396.959 kb on + strand at 396.967 kb on - strand at 396.967 kb on - strand at 396.984 kb on + strand at 396.984 kb on + strand at 396.992 kb on - strand at 396.992 kb on - strand at 396.998 kb on - strand at 397.023 kb on - strand at 397.025 kb on + strand at 397.025 kb on + strand at 397.044 kb on + strand at 397.059 kb on + strand at 397.059 kb on + strand at 397.064 kb on + strand at 397.083 kb on + strand at 397.091 kb on + strand at 397.099 kb on - strand at 397.103 kb on + strand at 397.110 kb on + strand at 397.110 kb on + strand at 397.118 kb on - strand at 397.118 kb on - strand at 397.125 kb on - strand at 397.130 kb on + strand at 397.136 kb on + strand at 397.136 kb on + strand at 397.141 kb on + strand at 397.142 kb on - strand at 397.144 kb on - strand at 397.144 kb on - strand at 397.144 kb on - strand at 397.144 kb on - strand at 397.149 kb on + strand at 397.155 kb on - strand at 397.157 kb on + strand at 397.157 kb on - strand at 397.193 kb on - strand at 397.193 kb on - strand at 397.208 kb on + strand at 397.208 kb on + strand at 397.221 kb on - strand at 397.223 kb on + strand at 397.235 kb on + strand at 397.238 kb on - strand at 397.260 kb on + strand at 397.262 kb on + strand at 397.265 kb on + strand at 397.265 kb on + strand at 397.268 kb on - strand at 397.270 kb on - strand at 397.273 kb on - strand at 397.273 kb on - strand at 397.275 kb on + strand at 397.287 kb on - strand at 397.287 kb on - strand at 397.287 kb on - strand at 397.289 kb on + strand at 397.289 kb on + strand at 397.320 kb on - strand at 397.322 kb on + strand at 397.324 kb on - strand at 397.327 kb on + strand at 397.335 kb on - strand at 397.335 kb on - strand at 397.337 kb on + strand at 397.337 kb on + strand at 397.337 kb on + strand at 397.337 kb on + strand at 397.337 kb on + strand at 397.337 kb on + strand at 397.345 kb on + strand at 397.345 kb on - strand at 397.345 kb on - strand at 397.347 kb on + strand at 397.353 kb on - strand at 397.353 kb on - strand at 397.353 kb on - strand at 397.353 kb on - strand at 397.355 kb on - strand at 397.355 kb on - strand at 397.355 kb on - strand at 397.355 kb on - strand at 397.373 kb on + strand at 397.373 kb on + strand at 397.375 kb on + strand at 397.378 kb on + strand at 397.411 kb on - strand at 397.411 kb on - strand at 397.484 kb on - strand at 397.486 kb on + strand at 397.486 kb on + strand at 397.542 kb on + strand at 397.542 kb on + strand at 397.542 kb on + strand at 397.542 kb on + strand at 397.542 kb on + strand at 397.544 kb on + strand at 397.550 kb on - strand at 397.550 kb on - strand at 397.550 kb on - strand at 397.550 kb on - strand at 397.552 kb on + strand at 397.560 kb on - strand at 397.570 kb on + strand at 397.603 kb on + strand at 397.604 kb on - strand at 397.608 kb on + strand at 397.608 kb on + strand at 397.611 kb on - strand at 397.611 kb on - strand at 397.616 kb on - strand at 397.618 kb on - strand at 397.618 kb on - strand at 397.640 kb on - strand at 397.643 kb on + strand at 397.651 kb on - strand at 397.651 kb on - strand at 397.660 kb on - strand at 397.663 kb on - strand at 397.674 kb on - strand at 397.674 kb on - strand at 397.676 kb on + strand at 397.682 kb on - strand at 397.684 kb on - strand at 397.726 kb on + strand at 397.732 kb on + strand at 397.787 kb on - strand at 397.799 kb on - strand at 397.799 kb on - strand at 397.800 kb on - strand at 397.802 kb on - strand at 397.823 kb on + strand at 397.824 kb on + strand at 397.832 kb on + strand at 397.877 kb on + strand at 397.877 kb on - strand at 397.877 kb on - strand at 397.879 kb on + strand at 397.879 kb on + strand at 397.884 kb on + strand at 397.887 kb on - strand at 397.887 kb on - strand at 397.887 kb on - strand at 397.890 kb on - strand at 397.914 kb on + strand at 397.922 kb on - strand at 397.938 kb on - strand at 397.938 kb on - strand at 397.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 396,658 + +0.9 396,666 - -0.4 396,679 - -0.7 396,687 + -0.5 396,690 - +0.3 396,690 - +0.0 396,712 - -0.1 396,723 - -2.4 396,741 - -0.8 396,752 + -0.5 396,762 + +1.5 396,762 + -1.4 396,770 - +3.8 396,770 - -2.2 396,776 - +1.3 396,780 + -3.0 396,796 + -0.6 396,801 + +1.3 396,809 - +0.2 396,809 - -1.4 396,823 - -1.0 396,828 + +3.9 396,828 + -1.4 396,836 - -2.4 396,864 + -0.9 396,864 + +0.4 396,864 + -1.0 396,869 + -2.0 396,876 + -0.4 396,877 - +1.3 396,884 + +2.9 396,884 - -0.7 396,889 - -0.6 396,892 - -0.4 396,894 + -0.2 396,894 - -1.9 396,902 - -2.5 396,920 + +0.6 396,930 + -1.1 396,930 + -0.9 396,932 + -0.7 396,932 + -1.0 396,932 + +0.1 396,932 + +0.7 396,932 + -2.5 396,932 + -0.3 396,939 - -0.4 396,940 - -0.3 396,940 - -0.6 396,940 - -0.7 396,940 - +1.0 396,959 + -1.7 396,959 + -0.9 396,967 - -1.6 396,967 - +2.9 396,984 + +0.4 396,984 + -1.0 396,992 - -1.4 396,992 - -1.0 396,998 - -0.7 397,023 - -0.4 397,025 + -0.5 397,025 + -1.3 397,044 + -3.9 397,059 + -1.2 397,059 + -0.5 397,064 + -1.1 397,083 + -2.1 397,091 + +1.0 397,099 - -0.1 397,103 + -0.8 397,110 + -0.4 397,110 + -0.8 397,118 - -1.3 397,118 - +1.3 397,125 - -0.4 397,130 + -0.7 397,136 + -2.0 397,136 + +0.3 397,141 + -0.4 397,142 - -1.3 397,144 - -0.8 397,144 - -0.6 397,144 - +1.0 397,144 - +0.0 397,149 + +0.3 397,155 - +0.3 397,157 + -0.6 397,157 - -1.6 397,193 - +1.6 397,193 - +0.9 397,208 + -1.2 397,208 + +0.5 397,221 - +0.1 397,223 + -0.1 397,235 + -1.1 397,238 - -0.5 397,260 + -0.4 397,262 + +1.2 397,265 + -0.5 397,265 + +0.2 397,268 - -0.4 397,270 - -0.5 397,273 - +0.3 397,273 - +0.5 397,275 + -0.6 397,287 - +0.2 397,287 - +1.0 397,287 - -0.7 397,289 + -1.0 397,289 + +0.9 397,320 - +0.3 397,322 + -0.2 397,324 - -1.3 397,327 + -0.1 397,335 - -1.5 397,335 - +2.3 397,337 + +0.1 397,337 + -3.0 397,337 + +2.0 397,337 + -2.0 397,337 + -0.5 397,337 + -0.5 397,345 + +0.3 397,345 - +1.3 397,345 - +0.3 397,347 + +1.2 397,353 - -0.3 397,353 - -4.1 397,353 - -3.6 397,353 - +0.0 397,355 - -0.1 397,355 - -1.0 397,355 - +1.9 397,355 - -0.5 397,373 + -0.7 397,373 + +0.9 397,375 + +1.1 397,378 + +2.2 397,411 - +2.3 397,411 - -2.0 397,484 - -0.7 397,486 + -0.7 397,486 + -2.3 397,542 + +0.2 397,542 + -0.4 397,542 + -0.8 397,542 + +0.6 397,542 + +0.3 397,544 + +0.3 397,550 - +0.3 397,550 - -2.9 397,550 - -3.4 397,550 - -0.3 397,552 + -2.4 397,560 - +0.4 397,570 + -1.3 397,603 + +1.0 397,604 - -0.1 397,608 + -0.2 397,608 + -2.7 397,611 - -2.7 397,611 - -0.7 397,616 - +0.3 397,618 - -1.5 397,618 - -0.3 397,640 - +1.0 397,643 + -1.3 397,651 - -1.7 397,651 - +0.2 397,660 - -3.6 397,663 - -0.9 397,674 - +0.9 397,674 - +0.5 397,676 + +1.3 397,682 - -0.1 397,684 - +0.4 397,726 + -0.2 397,732 + +0.1 397,787 - -0.3 397,799 - +1.6 397,799 - -0.7 397,800 - +0.1 397,802 - +1.0 397,823 + -0.2 397,824 + -0.2 397,832 + +0.4 397,877 + -1.0 397,877 - +0.3 397,877 - +1.0 397,879 + +0.6 397,879 + -1.2 397,884 + -1.4 397,887 - +1.6 397,887 - -1.2 397,887 - -1.3 397,890 - +0.1 397,914 + +0.9 397,922 - -0.2 397,938 - -0.2 397,938 - -0.3 397,938 - -2.3
Or see this region's nucleotide sequence