Experiment: L-Proline
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_600 and HP15_601 are separated by 173 nucleotides HP15_601 and HP15_602 are separated by 5 nucleotides HP15_602 and HP15_603 are separated by 70 nucleotides
HP15_600: HP15_600 - GGDEF domain protein, at 620,922 to 621,938
_600
HP15_601: HP15_601 - gamma-glutamyl phosphate reductase, at 622,112 to 623,368
_601
HP15_602: HP15_602 - nicotinic acid mononucleotide adenyltransferase, at 623,374 to 624,024
_602
HP15_603: HP15_603 - Iojap-related protein, at 624,095 to 624,445
_603
Position (kb) 622
623
624 Strain fitness (log2 ratio) -1
0
1 at 621.222 kb on - strand, within HP15_600 at 621.323 kb on - strand, within HP15_600 at 621.371 kb on - strand, within HP15_600 at 621.556 kb on - strand, within HP15_600 at 621.646 kb on + strand, within HP15_600 at 621.646 kb on + strand, within HP15_600 at 621.681 kb on + strand, within HP15_600 at 621.831 kb on + strand, within HP15_600 at 621.839 kb on - strand at 621.853 kb on + strand at 621.861 kb on - strand at 623.991 kb on + strand at 623.991 kb on + strand at 624.267 kb on + strand, within HP15_603
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline remove 621,222 - HP15_600 0.29 -1.0 621,323 - HP15_600 0.39 -1.0 621,371 - HP15_600 0.44 +0.7 621,556 - HP15_600 0.62 +1.1 621,646 + HP15_600 0.71 +0.7 621,646 + HP15_600 0.71 +1.1 621,681 + HP15_600 0.75 -0.2 621,831 + HP15_600 0.89 -1.2 621,839 - -0.6 621,853 + +0.1 621,861 - +0.3 623,991 + +0.8 623,991 + +0.3 624,267 + HP15_603 0.49 -0.1
Or see this region's nucleotide sequence