Strain Fitness in Marinobacter adhaerens HP15 around HP15_243

Experiment: L-Proline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_242 and HP15_243 are separated by 119 nucleotidesHP15_243 and HP15_244 are separated by 27 nucleotides HP15_242: HP15_242 - histidine kinase internal region, at 227,281 to 228,321 _242 HP15_243: HP15_243 - argininosuccinate lyase, at 228,441 to 229,850 _243 HP15_244: HP15_244 - PAS sensor diguanylate cyclase and phosphodiesterase, at 229,878 to 232,322 _244 Position (kb) 228 229 230Strain fitness (log2 ratio) -2 -1 0 1at 227.484 kb on + strand, within HP15_242at 227.511 kb on - strand, within HP15_242at 227.659 kb on + strand, within HP15_242at 227.678 kb on + strand, within HP15_242at 227.702 kb on + strand, within HP15_242at 227.757 kb on - strand, within HP15_242at 227.857 kb on + strand, within HP15_242at 227.857 kb on + strand, within HP15_242at 227.930 kb on - strand, within HP15_242at 228.018 kb on - strand, within HP15_242at 228.044 kb on - strand, within HP15_242at 228.044 kb on - strand, within HP15_242at 228.060 kb on + strand, within HP15_242at 228.067 kb on + strand, within HP15_242at 228.130 kb on + strand, within HP15_242at 228.143 kb on - strand, within HP15_242at 228.145 kb on + strand, within HP15_242at 228.145 kb on + strand, within HP15_242at 228.145 kb on + strand, within HP15_242at 228.150 kb on + strand, within HP15_242at 228.152 kb on + strand, within HP15_242at 228.152 kb on + strand, within HP15_242at 228.153 kb on - strand, within HP15_242at 228.153 kb on - strand, within HP15_242at 228.153 kb on - strand, within HP15_242at 228.153 kb on - strand, within HP15_242at 228.153 kb on - strand, within HP15_242at 228.246 kb on + strandat 228.259 kb on - strandat 228.281 kb on + strandat 228.299 kb on - strandat 228.344 kb on + strandat 228.348 kb on + strandat 228.358 kb on + strandat 228.366 kb on - strandat 228.397 kb on + strandat 229.937 kb on + strandat 229.942 kb on + strandat 229.954 kb on + strandat 229.992 kb on - strandat 229.992 kb on - strandat 230.008 kb on - strandat 230.069 kb on - strandat 230.193 kb on + strand, within HP15_244at 230.193 kb on + strand, within HP15_244at 230.193 kb on + strand, within HP15_244at 230.193 kb on + strand, within HP15_244at 230.201 kb on - strand, within HP15_244at 230.201 kb on - strand, within HP15_244at 230.213 kb on - strand, within HP15_244at 230.225 kb on + strand, within HP15_244at 230.227 kb on + strand, within HP15_244at 230.237 kb on + strand, within HP15_244at 230.298 kb on + strand, within HP15_244at 230.363 kb on - strand, within HP15_244at 230.409 kb on + strand, within HP15_244at 230.432 kb on + strand, within HP15_244at 230.433 kb on + strand, within HP15_244at 230.440 kb on - strand, within HP15_244at 230.477 kb on + strand, within HP15_244at 230.519 kb on - strand, within HP15_244at 230.566 kb on - strand, within HP15_244at 230.663 kb on + strand, within HP15_244at 230.700 kb on + strand, within HP15_244at 230.741 kb on - strand, within HP15_244at 230.748 kb on + strand, within HP15_244at 230.751 kb on - strand, within HP15_244at 230.753 kb on + strand, within HP15_244at 230.761 kb on - strand, within HP15_244at 230.775 kb on - strand, within HP15_244at 230.797 kb on + strand, within HP15_244at 230.810 kb on - strand, within HP15_244

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline
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227,484 + HP15_242 0.20 -1.1
227,511 - HP15_242 0.22 -0.4
227,659 + HP15_242 0.36 +0.6
227,678 + HP15_242 0.38 +0.5
227,702 + HP15_242 0.40 +0.0
227,757 - HP15_242 0.46 +0.2
227,857 + HP15_242 0.55 -0.3
227,857 + HP15_242 0.55 +0.2
227,930 - HP15_242 0.62 +0.5
228,018 - HP15_242 0.71 -0.4
228,044 - HP15_242 0.73 -0.2
228,044 - HP15_242 0.73 +0.5
228,060 + HP15_242 0.75 -0.4
228,067 + HP15_242 0.76 -0.3
228,130 + HP15_242 0.82 +0.0
228,143 - HP15_242 0.83 +0.2
228,145 + HP15_242 0.83 +0.5
228,145 + HP15_242 0.83 -0.5
228,145 + HP15_242 0.83 -0.2
228,150 + HP15_242 0.83 +1.0
228,152 + HP15_242 0.84 -0.4
228,152 + HP15_242 0.84 -0.6
228,153 - HP15_242 0.84 +0.0
228,153 - HP15_242 0.84 +0.0
228,153 - HP15_242 0.84 -1.6
228,153 - HP15_242 0.84 +0.4
228,153 - HP15_242 0.84 -0.0
228,246 + +0.6
228,259 - +0.2
228,281 + -0.4
228,299 - +1.0
228,344 + +0.3
228,348 + +0.8
228,358 + -0.5
228,366 - +0.2
228,397 + -0.2
229,937 + +0.2
229,942 + -1.0
229,954 + -0.1
229,992 - +0.4
229,992 - -0.2
230,008 - -0.5
230,069 - +0.5
230,193 + HP15_244 0.13 -0.3
230,193 + HP15_244 0.13 -0.4
230,193 + HP15_244 0.13 -0.8
230,193 + HP15_244 0.13 +0.2
230,201 - HP15_244 0.13 -0.3
230,201 - HP15_244 0.13 +0.1
230,213 - HP15_244 0.14 -0.2
230,225 + HP15_244 0.14 -0.4
230,227 + HP15_244 0.14 +1.2
230,237 + HP15_244 0.15 +0.7
230,298 + HP15_244 0.17 +1.0
230,363 - HP15_244 0.20 -0.9
230,409 + HP15_244 0.22 +0.3
230,432 + HP15_244 0.23 +0.4
230,433 + HP15_244 0.23 +0.9
230,440 - HP15_244 0.23 -0.6
230,477 + HP15_244 0.24 -1.3
230,519 - HP15_244 0.26 -0.2
230,566 - HP15_244 0.28 +0.4
230,663 + HP15_244 0.32 +0.2
230,700 + HP15_244 0.34 -0.9
230,741 - HP15_244 0.35 -0.1
230,748 + HP15_244 0.36 +0.3
230,751 - HP15_244 0.36 +0.1
230,753 + HP15_244 0.36 -2.5
230,761 - HP15_244 0.36 +0.6
230,775 - HP15_244 0.37 -0.6
230,797 + HP15_244 0.38 -1.0
230,810 - HP15_244 0.38 -0.1

Or see this region's nucleotide sequence