Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2595 and Dsui_2596 are separated by 60 nucleotides Dsui_2596 and Dsui_2597 are separated by 32 nucleotides
Dsui_2595: Dsui_2595 - type II secretory pathway, pseudopilin PulG, at 2,750,273 to 2,751,646
_2595
Dsui_2596: Dsui_2596 - methyltransferase family protein, at 2,751,707 to 2,752,408
_2596
Dsui_2597: Dsui_2597 - tyrosine recombinase XerD, at 2,752,441 to 2,753,355
_2597
Position (kb)
2751
2752
2753 Strain fitness (log2 ratio)
-2
-1
0
1 at 2750.772 kb on - strand, within Dsui_2595 at 2750.885 kb on - strand, within Dsui_2595 at 2750.887 kb on + strand, within Dsui_2595 at 2750.900 kb on - strand, within Dsui_2595 at 2751.001 kb on + strand, within Dsui_2595 at 2751.144 kb on - strand, within Dsui_2595 at 2751.171 kb on + strand, within Dsui_2595 at 2751.179 kb on - strand, within Dsui_2595 at 2751.205 kb on - strand, within Dsui_2595 at 2751.272 kb on + strand, within Dsui_2595 at 2751.332 kb on + strand, within Dsui_2595 at 2751.333 kb on + strand, within Dsui_2595 at 2751.458 kb on + strand at 2751.458 kb on + strand, within Dsui_2595 at 2751.524 kb on - strand at 2751.664 kb on + strand at 2751.675 kb on + strand at 2751.675 kb on + strand at 2751.675 kb on + strand at 2751.675 kb on + strand at 2751.675 kb on + strand at 2751.707 kb on + strand at 2751.728 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.784 kb on - strand at 2751.792 kb on - strand, within Dsui_2596 at 2751.795 kb on + strand, within Dsui_2596 at 2751.795 kb on + strand, within Dsui_2596 at 2751.803 kb on - strand at 2751.817 kb on + strand, within Dsui_2596 at 2751.891 kb on - strand, within Dsui_2596 at 2751.891 kb on - strand, within Dsui_2596 at 2751.909 kb on + strand, within Dsui_2596 at 2751.909 kb on + strand, within Dsui_2596 at 2751.922 kb on + strand, within Dsui_2596 at 2751.983 kb on + strand, within Dsui_2596 at 2751.983 kb on + strand, within Dsui_2596 at 2751.992 kb on - strand, within Dsui_2596 at 2752.020 kb on + strand, within Dsui_2596 at 2752.036 kb on + strand, within Dsui_2596 at 2752.041 kb on + strand, within Dsui_2596 at 2752.075 kb on + strand, within Dsui_2596 at 2752.089 kb on - strand, within Dsui_2596 at 2752.134 kb on + strand, within Dsui_2596 at 2752.259 kb on + strand, within Dsui_2596 at 2752.267 kb on - strand, within Dsui_2596 at 2752.360 kb on + strand at 2752.373 kb on + strand at 2752.453 kb on - strand at 2752.459 kb on - strand at 2752.464 kb on - strand at 2752.465 kb on - strand at 2752.497 kb on - strand at 2752.502 kb on - strand at 2752.532 kb on + strand at 2752.548 kb on - strand, within Dsui_2597 at 2752.568 kb on + strand, within Dsui_2597 at 2752.634 kb on + strand, within Dsui_2597 at 2752.761 kb on - strand, within Dsui_2597 at 2752.785 kb on + strand, within Dsui_2597 at 2752.832 kb on - strand, within Dsui_2597 at 2752.859 kb on + strand, within Dsui_2597 at 2752.867 kb on - strand, within Dsui_2597 at 2752.889 kb on - strand, within Dsui_2597 at 2752.889 kb on - strand, within Dsui_2597 at 2752.889 kb on - strand, within Dsui_2597 at 2752.895 kb on - strand, within Dsui_2597 at 2752.895 kb on - strand, within Dsui_2597 at 2752.895 kb on - strand, within Dsui_2597 at 2752.911 kb on + strand, within Dsui_2597 at 2752.920 kb on + strand, within Dsui_2597 at 2752.968 kb on + strand, within Dsui_2597 at 2752.983 kb on - strand, within Dsui_2597 at 2753.014 kb on + strand, within Dsui_2597 at 2753.022 kb on - strand, within Dsui_2597 at 2753.134 kb on - strand, within Dsui_2597 at 2753.166 kb on + strand, within Dsui_2597 at 2753.179 kb on - strand, within Dsui_2597
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 2,750,772 - Dsui_2595 0.36 -1.0 2,750,885 - Dsui_2595 0.45 -0.3 2,750,887 + Dsui_2595 0.45 -0.6 2,750,900 - Dsui_2595 0.46 -1.5 2,751,001 + Dsui_2595 0.53 +0.1 2,751,144 - Dsui_2595 0.63 -1.8 2,751,171 + Dsui_2595 0.65 +0.1 2,751,179 - Dsui_2595 0.66 -0.4 2,751,205 - Dsui_2595 0.68 -2.5 2,751,272 + Dsui_2595 0.73 -0.3 2,751,332 + Dsui_2595 0.77 -0.5 2,751,333 + Dsui_2595 0.77 -0.6 2,751,458 + +1.5 2,751,458 + Dsui_2595 0.86 -0.5 2,751,524 - -0.1 2,751,664 + -0.4 2,751,675 + +0.3 2,751,675 + -0.6 2,751,675 + -0.3 2,751,675 + +0.1 2,751,675 + -0.6 2,751,707 + -0.2 2,751,728 + -0.6 2,751,776 + -0.2 2,751,776 + -0.4 2,751,776 + +0.2 2,751,776 + -0.7 2,751,776 + -0.7 2,751,776 + -0.7 2,751,784 - +0.5 2,751,792 - Dsui_2596 0.12 -0.7 2,751,795 + Dsui_2596 0.13 -1.4 2,751,795 + Dsui_2596 0.13 -0.1 2,751,803 - +1.5 2,751,817 + Dsui_2596 0.16 +0.1 2,751,891 - Dsui_2596 0.26 -0.6 2,751,891 - Dsui_2596 0.26 -2.1 2,751,909 + Dsui_2596 0.29 -0.5 2,751,909 + Dsui_2596 0.29 -0.8 2,751,922 + Dsui_2596 0.31 -0.2 2,751,983 + Dsui_2596 0.39 +0.6 2,751,983 + Dsui_2596 0.39 -0.2 2,751,992 - Dsui_2596 0.41 -1.1 2,752,020 + Dsui_2596 0.45 -0.8 2,752,036 + Dsui_2596 0.47 -0.5 2,752,041 + Dsui_2596 0.48 -0.9 2,752,075 + Dsui_2596 0.52 -0.2 2,752,089 - Dsui_2596 0.54 -1.1 2,752,134 + Dsui_2596 0.61 -0.4 2,752,259 + Dsui_2596 0.79 -0.7 2,752,267 - Dsui_2596 0.80 +1.3 2,752,360 + +0.2 2,752,373 + -1.8 2,752,453 - -1.4 2,752,459 - -2.3 2,752,464 - -0.2 2,752,465 - +0.5 2,752,497 - -0.7 2,752,502 - +0.0 2,752,532 + +0.2 2,752,548 - Dsui_2597 0.12 -0.6 2,752,568 + Dsui_2597 0.14 -0.4 2,752,634 + Dsui_2597 0.21 -0.9 2,752,761 - Dsui_2597 0.35 -1.2 2,752,785 + Dsui_2597 0.38 -0.9 2,752,832 - Dsui_2597 0.43 -0.2 2,752,859 + Dsui_2597 0.46 -0.4 2,752,867 - Dsui_2597 0.47 -0.3 2,752,889 - Dsui_2597 0.49 -0.2 2,752,889 - Dsui_2597 0.49 -1.2 2,752,889 - Dsui_2597 0.49 -1.2 2,752,895 - Dsui_2597 0.50 -2.4 2,752,895 - Dsui_2597 0.50 -1.2 2,752,895 - Dsui_2597 0.50 -1.4 2,752,911 + Dsui_2597 0.51 -0.7 2,752,920 + Dsui_2597 0.52 -0.7 2,752,968 + Dsui_2597 0.58 +0.3 2,752,983 - Dsui_2597 0.59 -0.8 2,753,014 + Dsui_2597 0.63 -0.0 2,753,022 - Dsui_2597 0.63 -0.3 2,753,134 - Dsui_2597 0.76 -0.3 2,753,166 + Dsui_2597 0.79 -0.4 2,753,179 - Dsui_2597 0.81 +0.4
Or see this region's nucleotide sequence