Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2099 and Dsui_2100 are separated by 294 nucleotides Dsui_2100 and Dsui_2101 are separated by 4 nucleotides Dsui_2101 and Dsui_2102 are separated by 3 nucleotides Dsui_2102 and Dsui_2103 are separated by 132 nucleotides
Dsui_2099: Dsui_2099 - RNA polymerase sigma factor, sigma-70 family, at 2,223,869 to 2,224,462
_2099
Dsui_2100: Dsui_2100 - hypothetical protein, at 2,224,757 to 2,225,161
_2100
Dsui_2101: Dsui_2101 - hypothetical protein, at 2,225,166 to 2,225,657
_2101
Dsui_2102: Dsui_2102 - hypothetical protein, at 2,225,661 to 2,225,909
_2102
Dsui_2103: Dsui_2103 - hypothetical protein, at 2,226,042 to 2,226,308
_2103
Position (kb)
2225
2226 Strain fitness (log2 ratio)
-1
0
1
2 at 2224.169 kb on + strand, within Dsui_2099 at 2224.178 kb on - strand at 2224.178 kb on - strand, within Dsui_2099 at 2224.269 kb on + strand at 2224.311 kb on - strand at 2224.353 kb on - strand, within Dsui_2099 at 2224.410 kb on + strand at 2224.467 kb on + strand at 2224.484 kb on - strand at 2224.484 kb on - strand at 2224.623 kb on + strand at 2224.631 kb on - strand at 2224.631 kb on - strand at 2224.664 kb on - strand at 2224.664 kb on - strand at 2224.715 kb on - strand at 2224.720 kb on + strand at 2224.883 kb on + strand at 2224.937 kb on + strand, within Dsui_2100 at 2224.945 kb on - strand, within Dsui_2100 at 2224.969 kb on - strand at 2225.183 kb on + strand at 2225.238 kb on + strand, within Dsui_2101 at 2225.292 kb on - strand, within Dsui_2101 at 2225.295 kb on + strand, within Dsui_2101 at 2225.340 kb on + strand, within Dsui_2101 at 2225.343 kb on - strand, within Dsui_2101 at 2225.414 kb on + strand, within Dsui_2101 at 2225.430 kb on + strand, within Dsui_2101 at 2225.480 kb on + strand at 2225.585 kb on - strand, within Dsui_2101 at 2225.617 kb on - strand at 2225.691 kb on - strand, within Dsui_2102 at 2225.715 kb on + strand at 2225.715 kb on + strand, within Dsui_2102 at 2225.715 kb on + strand at 2225.715 kb on + strand at 2225.718 kb on - strand, within Dsui_2102 at 2225.723 kb on - strand, within Dsui_2102 at 2225.723 kb on - strand at 2225.723 kb on - strand at 2225.723 kb on - strand, within Dsui_2102 at 2225.723 kb on - strand, within Dsui_2102 at 2225.723 kb on - strand, within Dsui_2102 at 2225.723 kb on - strand at 2225.840 kb on - strand, within Dsui_2102 at 2225.873 kb on - strand, within Dsui_2102 at 2225.919 kb on + strand at 2226.024 kb on + strand at 2226.025 kb on + strand at 2226.067 kb on - strand at 2226.067 kb on - strand at 2226.095 kb on + strand, within Dsui_2103 at 2226.242 kb on + strand, within Dsui_2103 at 2226.247 kb on + strand, within Dsui_2103 at 2226.250 kb on - strand, within Dsui_2103 at 2226.255 kb on - strand at 2226.255 kb on - strand, within Dsui_2103 at 2226.255 kb on - strand at 2226.263 kb on + strand, within Dsui_2103 at 2226.303 kb on - strand at 2226.407 kb on + strand at 2226.439 kb on + strand at 2226.490 kb on - strand at 2226.528 kb on + strand at 2226.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 2,224,169 + Dsui_2099 0.51 +0.8 2,224,178 - +0.0 2,224,178 - Dsui_2099 0.52 +0.9 2,224,269 + +0.4 2,224,311 - +2.4 2,224,353 - Dsui_2099 0.81 -0.3 2,224,410 + -0.5 2,224,467 + +1.4 2,224,484 - -0.6 2,224,484 - +0.4 2,224,623 + -0.2 2,224,631 - +0.3 2,224,631 - +0.3 2,224,664 - +0.2 2,224,664 - +2.4 2,224,715 - -0.2 2,224,720 + +1.0 2,224,883 + +0.8 2,224,937 + Dsui_2100 0.44 -0.3 2,224,945 - Dsui_2100 0.46 +0.9 2,224,969 - -0.2 2,225,183 + +1.3 2,225,238 + Dsui_2101 0.15 +0.5 2,225,292 - Dsui_2101 0.26 -0.6 2,225,295 + Dsui_2101 0.26 -1.7 2,225,340 + Dsui_2101 0.35 -0.2 2,225,343 - Dsui_2101 0.36 +0.0 2,225,414 + Dsui_2101 0.50 -0.8 2,225,430 + Dsui_2101 0.54 -0.6 2,225,480 + +1.8 2,225,585 - Dsui_2101 0.85 +0.1 2,225,617 - +0.8 2,225,691 - Dsui_2102 0.12 -0.6 2,225,715 + +1.4 2,225,715 + Dsui_2102 0.22 -0.8 2,225,715 + +0.8 2,225,715 + +1.9 2,225,718 - Dsui_2102 0.23 -0.4 2,225,723 - Dsui_2102 0.25 -0.2 2,225,723 - +0.8 2,225,723 - +0.2 2,225,723 - Dsui_2102 0.25 +0.6 2,225,723 - Dsui_2102 0.25 +1.9 2,225,723 - Dsui_2102 0.25 +0.1 2,225,723 - +0.8 2,225,840 - Dsui_2102 0.72 -0.6 2,225,873 - Dsui_2102 0.85 -0.8 2,225,919 + -0.6 2,226,024 + +0.0 2,226,025 + -0.1 2,226,067 - +1.0 2,226,067 - +0.5 2,226,095 + Dsui_2103 0.20 -0.6 2,226,242 + Dsui_2103 0.75 -0.1 2,226,247 + Dsui_2103 0.77 -0.1 2,226,250 - Dsui_2103 0.78 -1.0 2,226,255 - +0.8 2,226,255 - Dsui_2103 0.80 +0.5 2,226,255 - -0.2 2,226,263 + Dsui_2103 0.83 +0.1 2,226,303 - +1.4 2,226,407 + -0.2 2,226,439 + -0.2 2,226,490 - +0.8 2,226,528 + +0.0 2,226,536 - -1.0
Or see this region's nucleotide sequence