Strain Fitness in Dechlorosoma suillum PS around Dsui_1769

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1767 and Dsui_1768 are separated by 9 nucleotidesDsui_1768 and Dsui_1769 overlap by 4 nucleotidesDsui_1769 and Dsui_1770 are separated by 23 nucleotides Dsui_1767: Dsui_1767 - methyltransferase family protein, at 1,854,005 to 1,854,658 _1767 Dsui_1768: Dsui_1768 - WxcM-like protein, at 1,854,668 to 1,855,084 _1768 Dsui_1769: Dsui_1769 - putative PLP-dependent enzyme possibly involved in cell wall biogenesis, at 1,855,081 to 1,856,211 _1769 Dsui_1770: Dsui_1770 - hypothetical protein, at 1,856,235 to 1,857,332 _1770 Position (kb) 1855 1856 1857Strain fitness (log2 ratio) -2 -1 0 1at 1854.106 kb on + strand, within Dsui_1767at 1854.149 kb on + strand, within Dsui_1767at 1854.247 kb on + strand, within Dsui_1767at 1854.272 kb on + strand, within Dsui_1767at 1854.437 kb on + strand, within Dsui_1767at 1854.476 kb on + strand, within Dsui_1767at 1854.557 kb on + strand, within Dsui_1767at 1854.596 kb on + strandat 1854.650 kb on - strandat 1854.661 kb on - strandat 1854.670 kb on + strandat 1854.705 kb on + strandat 1854.721 kb on + strand, within Dsui_1768at 1854.735 kb on - strand, within Dsui_1768at 1854.818 kb on + strand, within Dsui_1768at 1854.836 kb on + strand, within Dsui_1768at 1854.837 kb on - strand, within Dsui_1768at 1854.842 kb on - strand, within Dsui_1768at 1854.891 kb on + strand, within Dsui_1768at 1854.941 kb on - strand, within Dsui_1768at 1854.989 kb on + strand, within Dsui_1768at 1854.998 kb on + strand, within Dsui_1768at 1855.006 kb on - strand, within Dsui_1768at 1855.016 kb on - strandat 1855.056 kb on + strandat 1855.059 kb on - strandat 1855.064 kb on + strandat 1855.141 kb on + strandat 1855.167 kb on - strandat 1855.169 kb on + strandat 1855.188 kb on + strandat 1855.238 kb on + strand, within Dsui_1769at 1855.238 kb on + strand, within Dsui_1769at 1855.243 kb on + strand, within Dsui_1769at 1855.243 kb on + strand, within Dsui_1769at 1855.243 kb on + strand, within Dsui_1769at 1855.246 kb on - strand, within Dsui_1769at 1855.246 kb on - strand, within Dsui_1769at 1855.383 kb on + strand, within Dsui_1769at 1855.739 kb on + strand, within Dsui_1769at 1855.786 kb on + strand, within Dsui_1769at 1855.797 kb on + strand, within Dsui_1769at 1855.820 kb on + strand, within Dsui_1769at 1855.828 kb on - strand, within Dsui_1769at 1855.926 kb on + strand, within Dsui_1769at 1855.934 kb on - strand, within Dsui_1769at 1856.114 kb on - strandat 1856.121 kb on - strandat 1856.158 kb on + strandat 1856.163 kb on + strandat 1856.285 kb on + strandat 1856.285 kb on + strandat 1856.285 kb on + strandat 1856.328 kb on + strandat 1856.336 kb on - strandat 1856.347 kb on - strand, within Dsui_1770at 1856.406 kb on - strand, within Dsui_1770at 1856.459 kb on - strand, within Dsui_1770at 1856.527 kb on - strand, within Dsui_1770at 1856.594 kb on + strand, within Dsui_1770at 1856.765 kb on - strand, within Dsui_1770at 1856.799 kb on + strand, within Dsui_1770at 1856.901 kb on - strand, within Dsui_1770at 1856.939 kb on - strand, within Dsui_1770at 1856.969 kb on + strand, within Dsui_1770at 1856.980 kb on + strand, within Dsui_1770at 1856.993 kb on - strand, within Dsui_1770at 1857.043 kb on - strand, within Dsui_1770at 1857.080 kb on - strand, within Dsui_1770at 1857.083 kb on + strand, within Dsui_1770at 1857.091 kb on - strand, within Dsui_1770at 1857.147 kb on - strand, within Dsui_1770at 1857.147 kb on - strand, within Dsui_1770at 1857.188 kb on + strand, within Dsui_1770

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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1,854,106 + Dsui_1767 0.15 +0.2
1,854,149 + Dsui_1767 0.22 -0.5
1,854,247 + Dsui_1767 0.37 -0.3
1,854,272 + Dsui_1767 0.41 -0.3
1,854,437 + Dsui_1767 0.66 -0.2
1,854,476 + Dsui_1767 0.72 -0.3
1,854,557 + Dsui_1767 0.84 -0.5
1,854,596 + -0.3
1,854,650 - -1.1
1,854,661 - -0.8
1,854,670 + +0.1
1,854,705 + -0.7
1,854,721 + Dsui_1768 0.13 -0.3
1,854,735 - Dsui_1768 0.16 -0.0
1,854,818 + Dsui_1768 0.36 -0.0
1,854,836 + Dsui_1768 0.40 -0.3
1,854,837 - Dsui_1768 0.41 +0.7
1,854,842 - Dsui_1768 0.42 +0.5
1,854,891 + Dsui_1768 0.53 -0.6
1,854,941 - Dsui_1768 0.65 -0.8
1,854,989 + Dsui_1768 0.77 -0.3
1,854,998 + Dsui_1768 0.79 +0.1
1,855,006 - Dsui_1768 0.81 -0.8
1,855,016 - +0.3
1,855,056 + -0.6
1,855,059 - -0.6
1,855,064 + +0.1
1,855,141 + -1.0
1,855,167 - -0.6
1,855,169 + -0.4
1,855,188 + -0.7
1,855,238 + Dsui_1769 0.14 -0.3
1,855,238 + Dsui_1769 0.14 -0.4
1,855,243 + Dsui_1769 0.14 -0.2
1,855,243 + Dsui_1769 0.14 -0.4
1,855,243 + Dsui_1769 0.14 -0.1
1,855,246 - Dsui_1769 0.15 -0.0
1,855,246 - Dsui_1769 0.15 +0.3
1,855,383 + Dsui_1769 0.27 -0.6
1,855,739 + Dsui_1769 0.58 -0.3
1,855,786 + Dsui_1769 0.62 -0.4
1,855,797 + Dsui_1769 0.63 -0.3
1,855,820 + Dsui_1769 0.65 +0.6
1,855,828 - Dsui_1769 0.66 -0.6
1,855,926 + Dsui_1769 0.75 -0.3
1,855,934 - Dsui_1769 0.75 +0.6
1,856,114 - +0.2
1,856,121 - -1.6
1,856,158 + -0.4
1,856,163 + -0.5
1,856,285 + -0.2
1,856,285 + -1.3
1,856,285 + -0.2
1,856,328 + -0.3
1,856,336 - -1.6
1,856,347 - Dsui_1770 0.10 +0.4
1,856,406 - Dsui_1770 0.16 -0.9
1,856,459 - Dsui_1770 0.20 -0.8
1,856,527 - Dsui_1770 0.27 -0.5
1,856,594 + Dsui_1770 0.33 -0.8
1,856,765 - Dsui_1770 0.48 -0.3
1,856,799 + Dsui_1770 0.51 -0.3
1,856,901 - Dsui_1770 0.61 +0.5
1,856,939 - Dsui_1770 0.64 -0.7
1,856,969 + Dsui_1770 0.67 -0.5
1,856,980 + Dsui_1770 0.68 -1.2
1,856,993 - Dsui_1770 0.69 +0.4
1,857,043 - Dsui_1770 0.74 -0.2
1,857,080 - Dsui_1770 0.77 +0.3
1,857,083 + Dsui_1770 0.77 -0.4
1,857,091 - Dsui_1770 0.78 -2.2
1,857,147 - Dsui_1770 0.83 -0.3
1,857,147 - Dsui_1770 0.83 -0.1
1,857,188 + Dsui_1770 0.87 -0.7

Or see this region's nucleotide sequence