Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1767 and Dsui_1768 are separated by 9 nucleotides Dsui_1768 and Dsui_1769 overlap by 4 nucleotides Dsui_1769 and Dsui_1770 are separated by 23 nucleotides
Dsui_1767: Dsui_1767 - methyltransferase family protein, at 1,854,005 to 1,854,658
_1767
Dsui_1768: Dsui_1768 - WxcM-like protein, at 1,854,668 to 1,855,084
_1768
Dsui_1769: Dsui_1769 - putative PLP-dependent enzyme possibly involved in cell wall biogenesis, at 1,855,081 to 1,856,211
_1769
Dsui_1770: Dsui_1770 - hypothetical protein, at 1,856,235 to 1,857,332
_1770
Position (kb)
1855
1856
1857 Strain fitness (log2 ratio)
-2
-1
0
1 at 1854.106 kb on + strand, within Dsui_1767 at 1854.149 kb on + strand, within Dsui_1767 at 1854.247 kb on + strand, within Dsui_1767 at 1854.272 kb on + strand, within Dsui_1767 at 1854.437 kb on + strand, within Dsui_1767 at 1854.476 kb on + strand, within Dsui_1767 at 1854.557 kb on + strand, within Dsui_1767 at 1854.596 kb on + strand at 1854.650 kb on - strand at 1854.661 kb on - strand at 1854.670 kb on + strand at 1854.705 kb on + strand at 1854.721 kb on + strand, within Dsui_1768 at 1854.735 kb on - strand, within Dsui_1768 at 1854.818 kb on + strand, within Dsui_1768 at 1854.836 kb on + strand, within Dsui_1768 at 1854.837 kb on - strand, within Dsui_1768 at 1854.842 kb on - strand, within Dsui_1768 at 1854.891 kb on + strand, within Dsui_1768 at 1854.941 kb on - strand, within Dsui_1768 at 1854.989 kb on + strand, within Dsui_1768 at 1854.998 kb on + strand, within Dsui_1768 at 1855.006 kb on - strand, within Dsui_1768 at 1855.016 kb on - strand at 1855.056 kb on + strand at 1855.059 kb on - strand at 1855.064 kb on + strand at 1855.141 kb on + strand at 1855.167 kb on - strand at 1855.169 kb on + strand at 1855.188 kb on + strand at 1855.238 kb on + strand, within Dsui_1769 at 1855.238 kb on + strand, within Dsui_1769 at 1855.243 kb on + strand, within Dsui_1769 at 1855.243 kb on + strand, within Dsui_1769 at 1855.243 kb on + strand, within Dsui_1769 at 1855.246 kb on - strand, within Dsui_1769 at 1855.246 kb on - strand, within Dsui_1769 at 1855.383 kb on + strand, within Dsui_1769 at 1855.739 kb on + strand, within Dsui_1769 at 1855.786 kb on + strand, within Dsui_1769 at 1855.797 kb on + strand, within Dsui_1769 at 1855.820 kb on + strand, within Dsui_1769 at 1855.828 kb on - strand, within Dsui_1769 at 1855.926 kb on + strand, within Dsui_1769 at 1855.934 kb on - strand, within Dsui_1769 at 1856.114 kb on - strand at 1856.121 kb on - strand at 1856.158 kb on + strand at 1856.163 kb on + strand at 1856.285 kb on + strand at 1856.285 kb on + strand at 1856.285 kb on + strand at 1856.328 kb on + strand at 1856.336 kb on - strand at 1856.347 kb on - strand, within Dsui_1770 at 1856.406 kb on - strand, within Dsui_1770 at 1856.459 kb on - strand, within Dsui_1770 at 1856.527 kb on - strand, within Dsui_1770 at 1856.594 kb on + strand, within Dsui_1770 at 1856.765 kb on - strand, within Dsui_1770 at 1856.799 kb on + strand, within Dsui_1770 at 1856.901 kb on - strand, within Dsui_1770 at 1856.939 kb on - strand, within Dsui_1770 at 1856.969 kb on + strand, within Dsui_1770 at 1856.980 kb on + strand, within Dsui_1770 at 1856.993 kb on - strand, within Dsui_1770 at 1857.043 kb on - strand, within Dsui_1770 at 1857.080 kb on - strand, within Dsui_1770 at 1857.083 kb on + strand, within Dsui_1770 at 1857.091 kb on - strand, within Dsui_1770 at 1857.147 kb on - strand, within Dsui_1770 at 1857.147 kb on - strand, within Dsui_1770 at 1857.188 kb on + strand, within Dsui_1770
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,854,106 + Dsui_1767 0.15 +0.2 1,854,149 + Dsui_1767 0.22 -0.5 1,854,247 + Dsui_1767 0.37 -0.3 1,854,272 + Dsui_1767 0.41 -0.3 1,854,437 + Dsui_1767 0.66 -0.2 1,854,476 + Dsui_1767 0.72 -0.3 1,854,557 + Dsui_1767 0.84 -0.5 1,854,596 + -0.3 1,854,650 - -1.1 1,854,661 - -0.8 1,854,670 + +0.1 1,854,705 + -0.7 1,854,721 + Dsui_1768 0.13 -0.3 1,854,735 - Dsui_1768 0.16 -0.0 1,854,818 + Dsui_1768 0.36 -0.0 1,854,836 + Dsui_1768 0.40 -0.3 1,854,837 - Dsui_1768 0.41 +0.7 1,854,842 - Dsui_1768 0.42 +0.5 1,854,891 + Dsui_1768 0.53 -0.6 1,854,941 - Dsui_1768 0.65 -0.8 1,854,989 + Dsui_1768 0.77 -0.3 1,854,998 + Dsui_1768 0.79 +0.1 1,855,006 - Dsui_1768 0.81 -0.8 1,855,016 - +0.3 1,855,056 + -0.6 1,855,059 - -0.6 1,855,064 + +0.1 1,855,141 + -1.0 1,855,167 - -0.6 1,855,169 + -0.4 1,855,188 + -0.7 1,855,238 + Dsui_1769 0.14 -0.3 1,855,238 + Dsui_1769 0.14 -0.4 1,855,243 + Dsui_1769 0.14 -0.2 1,855,243 + Dsui_1769 0.14 -0.4 1,855,243 + Dsui_1769 0.14 -0.1 1,855,246 - Dsui_1769 0.15 -0.0 1,855,246 - Dsui_1769 0.15 +0.3 1,855,383 + Dsui_1769 0.27 -0.6 1,855,739 + Dsui_1769 0.58 -0.3 1,855,786 + Dsui_1769 0.62 -0.4 1,855,797 + Dsui_1769 0.63 -0.3 1,855,820 + Dsui_1769 0.65 +0.6 1,855,828 - Dsui_1769 0.66 -0.6 1,855,926 + Dsui_1769 0.75 -0.3 1,855,934 - Dsui_1769 0.75 +0.6 1,856,114 - +0.2 1,856,121 - -1.6 1,856,158 + -0.4 1,856,163 + -0.5 1,856,285 + -0.2 1,856,285 + -1.3 1,856,285 + -0.2 1,856,328 + -0.3 1,856,336 - -1.6 1,856,347 - Dsui_1770 0.10 +0.4 1,856,406 - Dsui_1770 0.16 -0.9 1,856,459 - Dsui_1770 0.20 -0.8 1,856,527 - Dsui_1770 0.27 -0.5 1,856,594 + Dsui_1770 0.33 -0.8 1,856,765 - Dsui_1770 0.48 -0.3 1,856,799 + Dsui_1770 0.51 -0.3 1,856,901 - Dsui_1770 0.61 +0.5 1,856,939 - Dsui_1770 0.64 -0.7 1,856,969 + Dsui_1770 0.67 -0.5 1,856,980 + Dsui_1770 0.68 -1.2 1,856,993 - Dsui_1770 0.69 +0.4 1,857,043 - Dsui_1770 0.74 -0.2 1,857,080 - Dsui_1770 0.77 +0.3 1,857,083 + Dsui_1770 0.77 -0.4 1,857,091 - Dsui_1770 0.78 -2.2 1,857,147 - Dsui_1770 0.83 -0.3 1,857,147 - Dsui_1770 0.83 -0.1 1,857,188 + Dsui_1770 0.87 -0.7
Or see this region's nucleotide sequence