Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1423 and Dsui_1424 are separated by 8 nucleotides Dsui_1424 and Dsui_1425 are separated by 69 nucleotides Dsui_1425 and Dsui_1426 are separated by 23 nucleotides
Dsui_1423: Dsui_1423 - twin arginine-targeting protein translocase TatB, at 1,476,075 to 1,476,458
_1423
Dsui_1424: Dsui_1424 - twin arginine targeting protein translocase subunit TatC, at 1,476,467 to 1,477,342
_1424
Dsui_1425: Dsui_1425 - putative glutamine amidotransferase, at 1,477,412 to 1,478,236
_1425
Dsui_1426: Dsui_1426 - periplasmic serine protease, Do/DeqQ family, at 1,478,260 to 1,479,414
_1426
Position (kb)
1477
1478
1479 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1477.307 kb on + strand at 1477.514 kb on + strand at 1477.514 kb on + strand, within Dsui_1425 at 1477.542 kb on + strand, within Dsui_1425 at 1477.626 kb on + strand, within Dsui_1425 at 1477.680 kb on - strand, within Dsui_1425 at 1477.682 kb on - strand, within Dsui_1425 at 1477.965 kb on + strand, within Dsui_1425 at 1477.998 kb on - strand, within Dsui_1425 at 1478.058 kb on + strand, within Dsui_1425 at 1478.069 kb on + strand, within Dsui_1425 at 1478.410 kb on - strand, within Dsui_1426 at 1478.420 kb on - strand, within Dsui_1426 at 1478.517 kb on + strand, within Dsui_1426 at 1478.747 kb on + strand, within Dsui_1426 at 1478.801 kb on - strand, within Dsui_1426 at 1478.846 kb on + strand at 1478.938 kb on - strand, within Dsui_1426 at 1479.096 kb on + strand, within Dsui_1426 at 1479.096 kb on + strand, within Dsui_1426 at 1479.104 kb on - strand, within Dsui_1426 at 1479.214 kb on - strand, within Dsui_1426 at 1479.215 kb on + strand, within Dsui_1426
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,477,307 + +1.3 1,477,514 + -0.2 1,477,514 + Dsui_1425 0.12 +0.5 1,477,542 + Dsui_1425 0.16 +0.2 1,477,626 + Dsui_1425 0.26 +0.1 1,477,680 - Dsui_1425 0.32 -0.1 1,477,682 - Dsui_1425 0.33 +1.8 1,477,965 + Dsui_1425 0.67 +1.8 1,477,998 - Dsui_1425 0.71 +0.0 1,478,058 + Dsui_1425 0.78 -0.5 1,478,069 + Dsui_1425 0.80 +2.8 1,478,410 - Dsui_1426 0.13 +0.3 1,478,420 - Dsui_1426 0.14 -0.9 1,478,517 + Dsui_1426 0.22 +0.0 1,478,747 + Dsui_1426 0.42 -0.3 1,478,801 - Dsui_1426 0.47 +0.3 1,478,846 + +0.3 1,478,938 - Dsui_1426 0.59 +1.0 1,479,096 + Dsui_1426 0.72 -0.3 1,479,096 + Dsui_1426 0.72 +0.3 1,479,104 - Dsui_1426 0.73 -0.8 1,479,214 - Dsui_1426 0.83 -0.5 1,479,215 + Dsui_1426 0.83 -0.6
Or see this region's nucleotide sequence