Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1421 and Dsui_1422 are separated by 1 nucleotides Dsui_1422 and Dsui_1423 are separated by 78 nucleotides Dsui_1423 and Dsui_1424 are separated by 8 nucleotides Dsui_1424 and Dsui_1425 are separated by 69 nucleotides Dsui_1425 and Dsui_1426 are separated by 23 nucleotides
Dsui_1421: Dsui_1421 - HIT family hydrolase, diadenosine tetraphosphate hydrolase, at 1,475,411 to 1,475,770
_1421
Dsui_1422: Dsui_1422 - twin arginine-targeting protein translocase, TatA/E family, at 1,475,772 to 1,475,996
_1422
Dsui_1423: Dsui_1423 - twin arginine-targeting protein translocase TatB, at 1,476,075 to 1,476,458
_1423
Dsui_1424: Dsui_1424 - twin arginine targeting protein translocase subunit TatC, at 1,476,467 to 1,477,342
_1424
Dsui_1425: Dsui_1425 - putative glutamine amidotransferase, at 1,477,412 to 1,478,236
_1425
Dsui_1426: Dsui_1426 - periplasmic serine protease, Do/DeqQ family, at 1,478,260 to 1,479,414
_1426
Position (kb) 1476
1477
1478 Strain fitness (log2 ratio) -1
0
1
2
3 at 1475.473 kb on - strand, within Dsui_1421 at 1475.473 kb on - strand, within Dsui_1421 at 1475.630 kb on + strand, within Dsui_1421 at 1475.990 kb on + strand at 1475.990 kb on + strand at 1475.998 kb on - strand at 1475.998 kb on - strand at 1477.307 kb on + strand at 1477.514 kb on + strand at 1477.514 kb on + strand, within Dsui_1425 at 1477.542 kb on + strand, within Dsui_1425 at 1477.626 kb on + strand, within Dsui_1425 at 1477.680 kb on - strand, within Dsui_1425 at 1477.682 kb on - strand, within Dsui_1425 at 1477.965 kb on + strand, within Dsui_1425 at 1477.998 kb on - strand, within Dsui_1425 at 1478.058 kb on + strand, within Dsui_1425 at 1478.069 kb on + strand, within Dsui_1425
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,475,473 - Dsui_1421 0.17 -0.8 1,475,473 - Dsui_1421 0.17 +1.0 1,475,630 + Dsui_1421 0.61 -0.1 1,475,990 + -0.6 1,475,990 + -0.1 1,475,998 - +0.6 1,475,998 - -0.2 1,477,307 + +1.3 1,477,514 + -0.2 1,477,514 + Dsui_1425 0.12 +0.5 1,477,542 + Dsui_1425 0.16 +0.2 1,477,626 + Dsui_1425 0.26 +0.1 1,477,680 - Dsui_1425 0.32 -0.1 1,477,682 - Dsui_1425 0.33 +1.8 1,477,965 + Dsui_1425 0.67 +1.8 1,477,998 - Dsui_1425 0.71 +0.0 1,478,058 + Dsui_1425 0.78 -0.5 1,478,069 + Dsui_1425 0.80 +2.8
Or see this region's nucleotide sequence