Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1257 and Dsui_1258 are separated by 38 nucleotides Dsui_1258 and Dsui_1259 are separated by 120 nucleotides Dsui_1259 and Dsui_1260 are separated by 71 nucleotides
Dsui_1257: Dsui_1257 - DNA-directed DNA polymerase III PolC, at 1,318,586 to 1,322,041
_1257
Dsui_1258: Dsui_1258 - transcriptional regulator, at 1,322,080 to 1,322,991
_1258
Dsui_1259: Dsui_1259 - Pirin-related protein, at 1,323,112 to 1,323,822
_1259
Dsui_1260: Dsui_1260 - multimeric flavodoxin WrbA, at 1,323,894 to 1,324,469
_1260
Position (kb)
1322
1323 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1322.188 kb on - strand, within Dsui_1258 at 1322.338 kb on + strand, within Dsui_1258 at 1322.387 kb on + strand, within Dsui_1258 at 1322.401 kb on - strand, within Dsui_1258 at 1322.413 kb on - strand, within Dsui_1258 at 1322.495 kb on - strand, within Dsui_1258 at 1322.495 kb on - strand, within Dsui_1258 at 1322.637 kb on - strand, within Dsui_1258 at 1322.663 kb on + strand at 1322.663 kb on + strand, within Dsui_1258 at 1322.671 kb on - strand, within Dsui_1258 at 1322.684 kb on - strand, within Dsui_1258 at 1322.702 kb on + strand, within Dsui_1258 at 1322.707 kb on - strand, within Dsui_1258 at 1322.717 kb on - strand, within Dsui_1258 at 1322.786 kb on + strand at 1322.847 kb on + strand at 1322.855 kb on - strand, within Dsui_1258 at 1322.865 kb on - strand, within Dsui_1258 at 1322.890 kb on - strand, within Dsui_1258 at 1323.051 kb on + strand at 1323.127 kb on - strand at 1323.251 kb on + strand at 1323.251 kb on + strand at 1323.420 kb on + strand at 1323.516 kb on + strand at 1323.655 kb on - strand at 1323.816 kb on + strand at 1323.823 kb on + strand at 1323.833 kb on - strand at 1323.875 kb on - strand at 1323.887 kb on - strand at 1323.937 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,322,188 - Dsui_1258 0.12 +0.5 1,322,338 + Dsui_1258 0.28 +0.4 1,322,387 + Dsui_1258 0.34 +0.7 1,322,401 - Dsui_1258 0.35 +0.7 1,322,413 - Dsui_1258 0.37 -0.2 1,322,495 - Dsui_1258 0.46 +0.1 1,322,495 - Dsui_1258 0.46 +1.8 1,322,637 - Dsui_1258 0.61 -0.3 1,322,663 + -0.5 1,322,663 + Dsui_1258 0.64 +0.0 1,322,671 - Dsui_1258 0.65 -0.1 1,322,684 - Dsui_1258 0.66 +1.0 1,322,702 + Dsui_1258 0.68 +0.6 1,322,707 - Dsui_1258 0.69 +0.1 1,322,717 - Dsui_1258 0.70 +1.8 1,322,786 + +3.1 1,322,847 + +1.4 1,322,855 - Dsui_1258 0.85 -0.7 1,322,865 - Dsui_1258 0.86 +0.3 1,322,890 - Dsui_1258 0.89 +1.0 1,323,051 + -1.3 1,323,127 - +1.4 1,323,251 + +1.0 1,323,251 + +1.4 1,323,420 + +0.4 1,323,516 + +0.8 1,323,655 - +2.6 1,323,816 + +0.5 1,323,823 + -0.3 1,323,833 - +1.0 1,323,875 - +1.8 1,323,887 - +2.4 1,323,937 + -0.1
Or see this region's nucleotide sequence