Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2712

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2710 and DvMF_2711 are separated by 215 nucleotidesDvMF_2711 and DvMF_2712 are separated by 9 nucleotidesDvMF_2712 and DvMF_2713 are separated by 171 nucleotides DvMF_2710: DvMF_2710 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,430,110 to 3,431,855 _2710 DvMF_2711: DvMF_2711 - cytochrome c family protein (RefSeq), at 3,432,071 to 3,432,541 _2711 DvMF_2712: DvMF_2712 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,432,551 to 3,434,572 _2712 DvMF_2713: DvMF_2713 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,434,744 to 3,436,714 _2713 Position (kb) 3432 3433 3434 3435Strain fitness (log2 ratio) -1 0 1at 3431.849 kb on + strandat 3431.857 kb on - strandat 3432.116 kb on - strandat 3432.169 kb on - strand, within DvMF_2711at 3432.304 kb on - strand, within DvMF_2711at 3432.339 kb on - strand, within DvMF_2711at 3432.608 kb on + strandat 3432.790 kb on + strand, within DvMF_2712at 3432.892 kb on - strand, within DvMF_2712at 3433.192 kb on + strand, within DvMF_2712at 3433.243 kb on + strand, within DvMF_2712at 3433.532 kb on - strand, within DvMF_2712at 3433.561 kb on + strand, within DvMF_2712at 3433.604 kb on + strand, within DvMF_2712at 3433.954 kb on - strand, within DvMF_2712at 3434.228 kb on + strand, within DvMF_2712at 3434.345 kb on - strand, within DvMF_2712at 3434.364 kb on + strand, within DvMF_2712at 3434.453 kb on - strandat 3434.581 kb on + strandat 3435.007 kb on - strand, within DvMF_2713at 3435.040 kb on - strand, within DvMF_2713at 3435.126 kb on + strand, within DvMF_2713

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
3,431,849 + -0.4
3,431,857 - +0.4
3,432,116 - +0.3
3,432,169 - DvMF_2711 0.21 -0.3
3,432,304 - DvMF_2711 0.49 -0.5
3,432,339 - DvMF_2711 0.57 +1.0
3,432,608 + -0.2
3,432,790 + DvMF_2712 0.12 -0.1
3,432,892 - DvMF_2712 0.17 -0.5
3,433,192 + DvMF_2712 0.32 +0.8
3,433,243 + DvMF_2712 0.34 +0.1
3,433,532 - DvMF_2712 0.49 -0.0
3,433,561 + DvMF_2712 0.50 +0.1
3,433,604 + DvMF_2712 0.52 +0.1
3,433,954 - DvMF_2712 0.69 +0.8
3,434,228 + DvMF_2712 0.83 -0.4
3,434,345 - DvMF_2712 0.89 -0.4
3,434,364 + DvMF_2712 0.90 -0.2
3,434,453 - -0.4
3,434,581 + +0.3
3,435,007 - DvMF_2713 0.13 -0.4
3,435,040 - DvMF_2713 0.15 +0.0
3,435,126 + DvMF_2713 0.19 -0.1

Or see this region's nucleotide sequence