Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3979

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
4,776,042	+				+0.5
4,776,042	+				-1.2
4,776,042	+				-1.0
4,776,042	+				+0.3
4,776,042	+				+0.1
4,776,042	+				-2.6
4,776,042	+				-0.1
4,776,042	+				+0.9
4,776,042	+				-1.9
4,776,042	+				-0.5
4,776,043	+				-1.3
4,776,050	-				+0.2
4,776,050	-				-0.1
4,776,050	-				+1.0
4,776,050	-				+0.8
4,776,050	-				-1.3
4,776,052	+				-1.0
4,776,052	-				-1.4
4,776,060	-				-0.6
4,776,063	-				-0.5
4,776,070	-				-0.2
4,776,189	+				-0.4
4,776,197	-				+0.5
4,776,198	-				+2.6
4,776,201	+				+0.7
4,776,202	+				+0.5
4,776,202	+				-1.0
4,776,202	+				-0.0
4,776,202	+				+0.4
4,776,202	+				-1.1
4,776,209	-				+2.4
4,776,226	+				+0.4
4,776,231	+				-0.7
4,776,234	-				+1.7
4,776,234	-				+0.2
4,776,234	-				-1.3
4,776,234	-				+0.8
4,776,239	+				+0.4
4,776,239	-				-1.8
4,776,239	-				+0.5
4,776,244	+				+1.9
4,776,244	+				+1.7
4,776,244	-				-1.9
4,776,244	-				-1.5
4,776,246	+				-1.1
4,776,251	+				-0.0
4,776,252	-				-0.2
4,776,256	+				-1.2
4,776,257	+				-0.6
4,776,263	-				-1.0
4,776,265	-				+1.2
4,776,308	+				-1.1
4,776,313	+				+0.4
4,776,321	-				+0.3
4,776,330	-				+0.6
4,776,380	-				+0.1
4,776,380	-				-1.2
4,776,382	+				+1.5
4,776,402	-				+0.3
4,776,402	-				+2.0
4,776,478	+				-0.9
4,776,478	+				-1.2
4,776,478	+				-0.3
4,776,478	+				+1.5
4,776,480	-				-0.1
4,776,486	-				-1.8
4,776,486	-				+0.2
4,776,486	-				+0.2
4,776,508	+				-1.8
4,776,508	+				+0.1
4,776,516	-				+0.3
4,776,519	+				+0.2
4,776,519	+				+0.5
4,776,519	+				+1.3
4,776,519	+				-2.1
4,776,519	+				+0.2
4,776,527	-				+0.6
4,776,527	-				-0.3
4,776,527	-				-1.6
4,776,527	-				-2.3
4,776,527	-				-2.6
4,776,535	-				+0.3
4,776,558	-		Shewana3_3978	0.15	+1.3
4,776,558	-		Shewana3_3978	0.15	-2.0
4,776,559	+		Shewana3_3978	0.16	-1.0
4,776,559	+		Shewana3_3978	0.16	+0.2
4,776,559	+		Shewana3_3978	0.16	+0.1
4,776,559	+		Shewana3_3978	0.16	-1.4
4,776,559	+		Shewana3_3978	0.16	+0.1
4,776,559	+		Shewana3_3978	0.16	-0.6
4,776,559	+		Shewana3_3978	0.16	+0.1
4,776,559	+		Shewana3_3978	0.16	+0.8
4,776,559	+		Shewana3_3978	0.16	-0.9
4,776,559	+		Shewana3_3978	0.16	-0.6
4,776,567	-		Shewana3_3978	0.18	+0.1
4,776,567	-		Shewana3_3978	0.18	+0.1
4,776,567	-		Shewana3_3978	0.18	+0.3
4,776,567	-		Shewana3_3978	0.18	+0.3
4,776,567	-		Shewana3_3978	0.18	-0.8
4,776,567	-		Shewana3_3978	0.18	-0.0
4,776,593	-		Shewana3_3978	0.25	+0.3
4,776,600	-		Shewana3_3978	0.26	+0.6
4,776,600	-		Shewana3_3978	0.26	-1.4
4,776,609	+		Shewana3_3978	0.29	-1.8
4,776,696	+		Shewana3_3978	0.52	+0.3
4,776,742	+		Shewana3_3978	0.64	+2.2
4,776,749	-		Shewana3_3978	0.66	-1.3
4,776,763	+		Shewana3_3978	0.70	+1.7
4,776,763	+		Shewana3_3978	0.70	+0.6
4,776,806	+		Shewana3_3978	0.81	+0.2
4,776,811	+		Shewana3_3978	0.82	-0.3
4,776,834	+		Shewana3_3978	0.88	-0.7
4,776,834	+		Shewana3_3978	0.88	-0.1
4,776,854	+				-1.8
4,776,854	+				-1.6
4,776,862	-				+0.3
4,776,938	-				-1.6
4,776,940	+				-1.3
4,776,941	+				-1.8
4,776,948	-				+0.5
4,776,948	-				+1.8
4,776,948	-				+2.4
4,777,012	+				+0.6
4,777,012	+				-1.2
4,777,012	+				-0.1
4,777,018	+				+0.2
4,777,020	-		Shewana3_3979	0.10	-0.9
4,777,052	-		Shewana3_3979	0.17	-1.1
4,777,061	+		Shewana3_3979	0.19	+0.2
4,777,061	+		Shewana3_3979	0.19	+0.1
4,777,061	+		Shewana3_3979	0.19	-0.3
4,777,069	-		Shewana3_3979	0.21	+2.2
4,777,069	-		Shewana3_3979	0.21	-2.1
4,777,069	-		Shewana3_3979	0.21	-2.1
4,777,069	-		Shewana3_3979	0.21	+0.7
4,777,069	-		Shewana3_3979	0.21	+0.4
4,777,079	+		Shewana3_3979	0.23	+0.0
4,777,079	+		Shewana3_3979	0.23	+0.5
4,777,079	+		Shewana3_3979	0.23	-1.6
4,777,079	+		Shewana3_3979	0.23	-1.8
4,777,087	-		Shewana3_3979	0.25	-1.2
4,777,087	-		Shewana3_3979	0.25	+1.8
4,777,087	-		Shewana3_3979	0.25	+0.7
4,777,102	-		Shewana3_3979	0.28	+0.3
4,777,102	-		Shewana3_3979	0.28	+2.7
4,777,102	-		Shewana3_3979	0.28	+2.2
4,777,102	-		Shewana3_3979	0.28	+0.1
4,777,104	-		Shewana3_3979	0.29	+2.3
4,777,110	-		Shewana3_3979	0.30	+0.7
4,777,110	-		Shewana3_3979	0.30	-0.6
4,777,111	+		Shewana3_3979	0.30	+0.0
4,777,119	+		Shewana3_3979	0.32	+1.1
4,777,119	+		Shewana3_3979	0.32	+0.5
4,777,119	+		Shewana3_3979	0.32	+2.2
4,777,119	+		Shewana3_3979	0.32	+0.7
4,777,119	+		Shewana3_3979	0.32	+0.5
4,777,119	+		Shewana3_3979	0.32	+0.2
4,777,119	+		Shewana3_3979	0.32	+0.0
4,777,119	+		Shewana3_3979	0.32	+0.3
4,777,119	+		Shewana3_3979	0.32	-1.6
4,777,119	+		Shewana3_3979	0.32	-1.2
4,777,119	+		Shewana3_3979	0.32	+0.3
4,777,119	+		Shewana3_3979	0.32	+2.0
4,777,119	+		Shewana3_3979	0.32	-1.9
4,777,119	+		Shewana3_3979	0.32	-1.3
4,777,119	+		Shewana3_3979	0.32	+0.4
4,777,119	-		Shewana3_3979	0.32	-1.4
4,777,124	+		Shewana3_3979	0.33	+0.5
4,777,126	+		Shewana3_3979	0.33	+2.4
4,777,127	-		Shewana3_3979	0.34	+0.5
4,777,127	-		Shewana3_3979	0.34	+0.1
4,777,127	-		Shewana3_3979	0.34	-2.0
4,777,127	-		Shewana3_3979	0.34	+0.2
4,777,127	-		Shewana3_3979	0.34	-0.2
4,777,127	-		Shewana3_3979	0.34	+2.3
4,777,127	-		Shewana3_3979	0.34	-1.5
4,777,127	-		Shewana3_3979	0.34	-1.6
4,777,127	-		Shewana3_3979	0.34	+0.4
4,777,142	+		Shewana3_3979	0.37	-0.9
4,777,155	+		Shewana3_3979	0.40	+0.6
4,777,168	-		Shewana3_3979	0.42	-1.7
4,777,186	-		Shewana3_3979	0.46	-1.0
4,777,195	+		Shewana3_3979	0.48	+0.3
4,777,195	+		Shewana3_3979	0.48	+0.5
4,777,195	+		Shewana3_3979	0.48	+1.9
4,777,212	+		Shewana3_3979	0.52	-0.5
4,777,217	+		Shewana3_3979	0.53	+0.1
4,777,217	+		Shewana3_3979	0.53	+0.2
4,777,217	+		Shewana3_3979	0.53	+0.4
4,777,220	-		Shewana3_3979	0.54	-0.3
4,777,220	-		Shewana3_3979	0.54	-1.9
4,777,225	-		Shewana3_3979	0.55	+0.4
4,777,225	-		Shewana3_3979	0.55	-2.1
4,777,225	-		Shewana3_3979	0.55	-0.4
4,777,225	-		Shewana3_3979	0.55	+0.3
4,777,225	-		Shewana3_3979	0.55	-0.3
4,777,289	-		Shewana3_3979	0.69	+0.2
4,777,334	-		Shewana3_3979	0.79	-1.3
4,777,338	+		Shewana3_3979	0.80	-1.0
4,777,343	+		Shewana3_3979	0.81	+0.3
4,777,350	-		Shewana3_3979	0.82	+0.5
4,777,355	-		Shewana3_3979	0.83	+2.1
4,777,360	-		Shewana3_3979	0.84	-0.6
4,777,360	-		Shewana3_3979	0.84	-1.0
4,777,410	-				+1.3
4,777,434	+				+0.4
4,777,436	+				-1.2
4,777,442	-				-1.5
4,777,444	-				+0.2
4,777,444	-				+2.1
4,777,444	-				+0.2
4,777,444	-				-0.1
4,777,444	-				-2.0
4,777,444	-				-1.4
4,777,491	+				+2.1
4,777,536	+				+0.6
4,777,571	-		Shewana3_3980	0.14	+2.1
4,777,592	+		Shewana3_3980	0.19	+0.4
4,777,603	+		Shewana3_3980	0.21	+0.4
4,777,605	-		Shewana3_3980	0.21	+0.2
4,777,611	-		Shewana3_3980	0.23	+0.3
4,777,636	+		Shewana3_3980	0.28	-0.8
4,777,636	+		Shewana3_3980	0.28	+0.2
4,777,644	-		Shewana3_3980	0.30	+0.1
4,777,647	-		Shewana3_3980	0.30	+0.4
4,777,647	-		Shewana3_3980	0.30	-0.2
4,777,680	+		Shewana3_3980	0.37	-2.1
4,777,688	-		Shewana3_3980	0.39	-1.5
4,777,750	-		Shewana3_3980	0.52	+2.2
4,777,795	+		Shewana3_3980	0.61	+0.2
4,777,878	-		Shewana3_3980	0.79	-2.4
4,778,082	+				-0.7
4,778,095	-				-1.1
4,778,127	+				+0.3
4,778,299	-		Shewana3_3981	0.46	+0.3
4,778,301	+		Shewana3_3981	0.47	-1.7
4,778,372	-		Shewana3_3981	0.70	+2.0