Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3977

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
4,774,525	-		Shewana3_3975	0.71	-0.3
4,774,595	-		Shewana3_3975	0.78	+0.5
4,774,605	-		Shewana3_3975	0.79	-1.2
4,774,620	-		Shewana3_3975	0.81	-1.2
4,774,620	-		Shewana3_3975	0.81	-1.2
4,774,620	-		Shewana3_3975	0.81	-0.0
4,774,830	-				-1.1
4,775,022	+		Shewana3_3976	0.23	+0.2
4,775,025	+		Shewana3_3976	0.24	+0.6
4,775,047	+		Shewana3_3976	0.28	+0.4
4,775,094	-		Shewana3_3976	0.36	+0.3
4,775,100	-		Shewana3_3976	0.38	-1.3
4,775,208	+		Shewana3_3976	0.58	+1.8
4,775,208	+		Shewana3_3976	0.58	-1.7
4,775,216	-		Shewana3_3976	0.59	+1.9
4,775,216	-		Shewana3_3976	0.59	-1.4
4,775,216	-		Shewana3_3976	0.59	+0.2
4,775,216	-		Shewana3_3976	0.59	-0.4
4,775,216	-		Shewana3_3976	0.59	-1.0
4,775,216	-		Shewana3_3976	0.59	+0.8
4,775,250	-		Shewana3_3976	0.66	+0.3
4,775,312	+		Shewana3_3976	0.77	-0.9
4,775,317	+		Shewana3_3976	0.78	+0.8
4,775,333	-		Shewana3_3976	0.81	-0.4
4,775,344	+		Shewana3_3976	0.83	-1.3
4,775,352	-		Shewana3_3976	0.85	+0.6
4,775,501	+				-1.1
4,775,514	+				+1.0
4,775,514	+				+0.5
4,775,522	-				-1.3
4,775,525	+				+0.9
4,775,611	+		Shewana3_3977	0.19	-0.9
4,775,672	+		Shewana3_3977	0.30	-0.2
4,775,690	+		Shewana3_3977	0.33	+2.4
4,775,692	-		Shewana3_3977	0.33	+0.3
4,775,735	+		Shewana3_3977	0.41	+0.9
4,775,812	+		Shewana3_3977	0.55	+0.5
4,775,848	+		Shewana3_3977	0.61	+1.3
4,775,856	-		Shewana3_3977	0.62	-1.1
4,775,881	-		Shewana3_3977	0.67	+1.6
4,775,891	-		Shewana3_3977	0.69	+0.8
4,775,893	-		Shewana3_3977	0.69	-1.7
4,775,893	-		Shewana3_3977	0.69	+0.9
4,775,953	+		Shewana3_3977	0.80	+0.4
4,775,953	+		Shewana3_3977	0.80	-0.1
4,775,961	-		Shewana3_3977	0.81	-0.2
4,775,961	-		Shewana3_3977	0.81	-1.4
4,776,042	+				+0.5
4,776,042	+				-1.2
4,776,042	+				-1.0
4,776,042	+				+0.3
4,776,042	+				+0.1
4,776,042	+				-2.6
4,776,042	+				-0.1
4,776,042	+				+0.9
4,776,042	+				-1.9
4,776,042	+				-0.5
4,776,043	+				-1.3
4,776,050	-				+0.2
4,776,050	-				-0.1
4,776,050	-				+1.0
4,776,050	-				+0.8
4,776,050	-				-1.3
4,776,052	+				-1.0
4,776,052	-				-1.4
4,776,060	-				-0.6
4,776,063	-				-0.5
4,776,070	-				-0.2
4,776,189	+				-0.4
4,776,197	-				+0.5
4,776,198	-				+2.6
4,776,201	+				+0.7
4,776,202	+				+0.5
4,776,202	+				-1.0
4,776,202	+				-0.0
4,776,202	+				+0.4
4,776,202	+				-1.1
4,776,209	-				+2.4
4,776,226	+				+0.4
4,776,231	+				-0.7
4,776,234	-				+1.7
4,776,234	-				+0.2
4,776,234	-				-1.3
4,776,234	-				+0.8
4,776,239	+				+0.4
4,776,239	-				-1.8
4,776,239	-				+0.5
4,776,244	+				+1.9
4,776,244	+				+1.7
4,776,244	-				-1.9
4,776,244	-				-1.5
4,776,246	+				-1.1
4,776,251	+				-0.0
4,776,252	-				-0.2
4,776,256	+				-1.2
4,776,257	+				-0.6
4,776,263	-				-1.0
4,776,265	-				+1.2
4,776,308	+				-1.1
4,776,313	+				+0.4
4,776,321	-				+0.3
4,776,330	-				+0.6
4,776,380	-				+0.1
4,776,380	-				-1.2
4,776,382	+				+1.5
4,776,402	-				+0.3
4,776,402	-				+2.0
4,776,478	+				-0.9
4,776,478	+				-1.2
4,776,478	+				-0.3
4,776,478	+				+1.5
4,776,480	-				-0.1
4,776,486	-				-1.8
4,776,486	-				+0.2
4,776,486	-				+0.2
4,776,508	+				-1.8
4,776,508	+				+0.1
4,776,516	-				+0.3
4,776,519	+				+0.2
4,776,519	+				+0.5
4,776,519	+				+1.3
4,776,519	+				-2.1
4,776,519	+				+0.2
4,776,527	-				+0.6
4,776,527	-				-0.3
4,776,527	-				-1.6
4,776,527	-				-2.3
4,776,527	-				-2.6
4,776,535	-				+0.3
4,776,558	-		Shewana3_3978	0.15	+1.3
4,776,558	-		Shewana3_3978	0.15	-2.0
4,776,559	+		Shewana3_3978	0.16	-1.0
4,776,559	+		Shewana3_3978	0.16	+0.2
4,776,559	+		Shewana3_3978	0.16	+0.1
4,776,559	+		Shewana3_3978	0.16	-1.4
4,776,559	+		Shewana3_3978	0.16	+0.1
4,776,559	+		Shewana3_3978	0.16	-0.6
4,776,559	+		Shewana3_3978	0.16	+0.1
4,776,559	+		Shewana3_3978	0.16	+0.8
4,776,559	+		Shewana3_3978	0.16	-0.9
4,776,559	+		Shewana3_3978	0.16	-0.6
4,776,567	-		Shewana3_3978	0.18	+0.1
4,776,567	-		Shewana3_3978	0.18	+0.1
4,776,567	-		Shewana3_3978	0.18	+0.3
4,776,567	-		Shewana3_3978	0.18	+0.3
4,776,567	-		Shewana3_3978	0.18	-0.8
4,776,567	-		Shewana3_3978	0.18	-0.0
4,776,593	-		Shewana3_3978	0.25	+0.3
4,776,600	-		Shewana3_3978	0.26	+0.6
4,776,600	-		Shewana3_3978	0.26	-1.4
4,776,609	+		Shewana3_3978	0.29	-1.8
4,776,696	+		Shewana3_3978	0.52	+0.3
4,776,742	+		Shewana3_3978	0.64	+2.2
4,776,749	-		Shewana3_3978	0.66	-1.3
4,776,763	+		Shewana3_3978	0.70	+1.7
4,776,763	+		Shewana3_3978	0.70	+0.6
4,776,806	+		Shewana3_3978	0.81	+0.2
4,776,811	+		Shewana3_3978	0.82	-0.3
4,776,834	+		Shewana3_3978	0.88	-0.7
4,776,834	+		Shewana3_3978	0.88	-0.1
4,776,854	+				-1.8
4,776,854	+				-1.6
4,776,862	-				+0.3
4,776,938	-				-1.6
4,776,940	+				-1.3
4,776,941	+				-1.8
4,776,948	-				+0.5
4,776,948	-				+1.8
4,776,948	-				+2.4
4,777,012	+				+0.6
4,777,012	+				-1.2
4,777,012	+				-0.1
4,777,018	+				+0.2
4,777,020	-		Shewana3_3979	0.10	-0.9
4,777,052	-		Shewana3_3979	0.17	-1.1
4,777,061	+		Shewana3_3979	0.19	+0.2
4,777,061	+		Shewana3_3979	0.19	+0.1
4,777,061	+		Shewana3_3979	0.19	-0.3