Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3652 and Shewana3_3653 overlap by 11 nucleotides Shewana3_3653 and Shewana3_3654 are separated by 215 nucleotides Shewana3_3654 and Shewana3_3655 overlap by 1946 nucleotides Shewana3_3655 and Shewana3_3656 are separated by 345 nucleotides Shewana3_3656 and Shewana3_3657 are separated by 52 nucleotides
Shewana3_3652: Shewana3_3652 - methylation site containing protein (RefSeq), at 4,389,551 to 4,390,126
_3652
Shewana3_3653: Shewana3_3653 - methylation site containing protein (RefSeq), at 4,390,116 to 4,390,604
_3653
Shewana3_3654: Shewana3_3654 - no description, at 4,390,820 to 4,393,056
_3654
Shewana3_3655: Shewana3_3655 - IS4 family transposase (RefSeq), at 4,391,111 to 4,392,724
_3655
Shewana3_3656: Shewana3_3656 - methylation site containing protein (RefSeq), at 4,393,070 to 4,393,579
_3656
Shewana3_3657: Shewana3_3657 - methylation site containing protein (RefSeq), at 4,393,632 to 4,394,249
_3657
Position (kb) 4391
4392
4393 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4390.260 kb on + strand, within Shewana3_3653 at 4390.268 kb on - strand, within Shewana3_3653 at 4390.411 kb on + strand, within Shewana3_3653 at 4390.469 kb on + strand, within Shewana3_3653 at 4390.469 kb on + strand, within Shewana3_3653 at 4390.469 kb on + strand, within Shewana3_3653 at 4390.477 kb on - strand, within Shewana3_3653 at 4390.477 kb on - strand, within Shewana3_3653 at 4390.477 kb on - strand, within Shewana3_3653 at 4390.493 kb on + strand, within Shewana3_3653 at 4390.512 kb on + strand, within Shewana3_3653 at 4390.538 kb on + strand, within Shewana3_3653 at 4390.546 kb on - strand, within Shewana3_3653 at 4390.580 kb on - strand at 4390.636 kb on - strand at 4390.650 kb on - strand at 4390.758 kb on - strand at 4390.768 kb on + strand at 4390.977 kb on - strand at 4391.103 kb on - strand, within Shewana3_3654 at 4392.834 kb on + strand at 4392.918 kb on + strand at 4392.919 kb on + strand at 4392.919 kb on + strand at 4392.919 kb on + strand at 4392.926 kb on - strand at 4392.926 kb on - strand at 4392.935 kb on + strand at 4393.063 kb on - strand at 4393.069 kb on - strand at 4393.159 kb on - strand, within Shewana3_3656 at 4393.295 kb on + strand, within Shewana3_3656 at 4393.295 kb on + strand, within Shewana3_3656 at 4393.303 kb on - strand, within Shewana3_3656 at 4393.303 kb on - strand, within Shewana3_3656 at 4393.303 kb on - strand, within Shewana3_3656 at 4393.303 kb on - strand, within Shewana3_3656 at 4393.303 kb on - strand, within Shewana3_3656 at 4393.368 kb on - strand, within Shewana3_3656 at 4393.379 kb on - strand, within Shewana3_3656 at 4393.384 kb on - strand, within Shewana3_3656 at 4393.384 kb on - strand, within Shewana3_3656 at 4393.417 kb on + strand, within Shewana3_3656 at 4393.448 kb on + strand, within Shewana3_3656 at 4393.448 kb on + strand, within Shewana3_3656 at 4393.456 kb on - strand, within Shewana3_3656 at 4393.456 kb on - strand, within Shewana3_3656 at 4393.461 kb on - strand, within Shewana3_3656 at 4393.654 kb on - strand at 4393.667 kb on - strand at 4393.667 kb on - strand at 4393.681 kb on + strand at 4393.683 kb on + strand at 4393.689 kb on - strand at 4393.689 kb on - strand at 4393.689 kb on - strand at 4393.702 kb on - strand, within Shewana3_3657
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 4,390,260 + Shewana3_3653 0.29 -1.3 4,390,268 - Shewana3_3653 0.31 -0.6 4,390,411 + Shewana3_3653 0.60 -1.6 4,390,469 + Shewana3_3653 0.72 +0.7 4,390,469 + Shewana3_3653 0.72 -0.2 4,390,469 + Shewana3_3653 0.72 -1.4 4,390,477 - Shewana3_3653 0.74 -1.4 4,390,477 - Shewana3_3653 0.74 +0.2 4,390,477 - Shewana3_3653 0.74 -2.8 4,390,493 + Shewana3_3653 0.77 -0.1 4,390,512 + Shewana3_3653 0.81 +2.1 4,390,538 + Shewana3_3653 0.86 -1.7 4,390,546 - Shewana3_3653 0.88 -1.0 4,390,580 - +0.4 4,390,636 - +0.8 4,390,650 - -1.1 4,390,758 - +0.3 4,390,768 + +1.0 4,390,977 - -2.2 4,391,103 - Shewana3_3654 0.13 +0.5 4,392,834 + -0.1 4,392,918 + +0.3 4,392,919 + -0.0 4,392,919 + -0.2 4,392,919 + -1.3 4,392,926 - +0.3 4,392,926 - -1.1 4,392,935 + +0.5 4,393,063 - +0.8 4,393,069 - +0.6 4,393,159 - Shewana3_3656 0.17 -0.8 4,393,295 + Shewana3_3656 0.44 -1.1 4,393,295 + Shewana3_3656 0.44 -1.9 4,393,303 - Shewana3_3656 0.46 +2.0 4,393,303 - Shewana3_3656 0.46 -1.9 4,393,303 - Shewana3_3656 0.46 +0.9 4,393,303 - Shewana3_3656 0.46 +0.3 4,393,303 - Shewana3_3656 0.46 +0.7 4,393,368 - Shewana3_3656 0.58 +0.5 4,393,379 - Shewana3_3656 0.61 +0.3 4,393,384 - Shewana3_3656 0.62 +0.5 4,393,384 - Shewana3_3656 0.62 -0.1 4,393,417 + Shewana3_3656 0.68 +0.5 4,393,448 + Shewana3_3656 0.74 +0.3 4,393,448 + Shewana3_3656 0.74 -1.0 4,393,456 - Shewana3_3656 0.76 -0.0 4,393,456 - Shewana3_3656 0.76 +0.0 4,393,461 - Shewana3_3656 0.77 -1.3 4,393,654 - +0.7 4,393,667 - +0.2 4,393,667 - +1.5 4,393,681 + +1.0 4,393,683 + +5.5 4,393,689 - -0.3 4,393,689 - +0.2 4,393,689 - +3.1 4,393,702 - Shewana3_3657 0.11 +3.5
Or see this region's nucleotide sequence