Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0119

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3166 and Shewana3_R0118 are separated by 573 nucleotidesShewana3_R0118 and Shewana3_R0119 are separated by 176 nucleotidesShewana3_R0119 and Shewana3_R0120 are separated by 296 nucleotides Shewana3_3166: Shewana3_3166 - sodium pump decarboxylases, gamma subunit (RefSeq), at 3,799,067 to 3,799,324 _3166 Shewana3_R0118: Shewana3_R0118 - 5S ribosomal RNA (RefSeq), at 3,799,898 to 3,800,017 _R0118 Shewana3_R0119: Shewana3_R0119 - 23S ribosomal RNA (RefSeq), at 3,800,194 to 3,803,088 _R0119 Shewana3_R0120: Shewana3_R0120 - 16S ribosomal RNA (RefSeq), at 3,803,385 to 3,804,939 _R0120 Position (kb) 3800 3801 3802 3803 3804Strain fitness (log2 ratio) -1 0 1at 3799.509 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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3,799,509 + -1.3

Or see this region's nucleotide sequence