Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2760

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2759 and Shewana3_2760 are separated by 129 nucleotidesShewana3_2760 and Shewana3_2761 are separated by 427 nucleotides Shewana3_2759: Shewana3_2759 - hypothetical protein (RefSeq), at 3,295,045 to 3,295,941 _2759 Shewana3_2760: Shewana3_2760 - ABC transporter related (RefSeq), at 3,296,071 to 3,297,711 _2760 Shewana3_2761: Shewana3_2761 - copper-translocating P-type ATPase (RefSeq), at 3,298,139 to 3,300,400 _2761 Position (kb) 3296 3297 3298Strain fitness (log2 ratio) -2 -1 0 1 2at 3295.402 kb on - strand, within Shewana3_2759at 3295.485 kb on - strand, within Shewana3_2759at 3295.553 kb on + strand, within Shewana3_2759at 3295.589 kb on + strand, within Shewana3_2759at 3295.789 kb on + strand, within Shewana3_2759at 3295.858 kb on - strandat 3295.889 kb on + strandat 3295.892 kb on - strandat 3296.005 kb on - strandat 3296.005 kb on - strandat 3296.923 kb on + strand, within Shewana3_2760at 3296.976 kb on + strand, within Shewana3_2760at 3297.390 kb on + strand, within Shewana3_2760at 3297.413 kb on - strand, within Shewana3_2760at 3297.680 kb on + strandat 3297.716 kb on + strandat 3297.957 kb on - strandat 3297.983 kb on - strandat 3298.003 kb on + strandat 3298.031 kb on - strandat 3298.153 kb on + strandat 3298.241 kb on - strandat 3298.441 kb on + strand, within Shewana3_2761at 3298.480 kb on + strand, within Shewana3_2761at 3298.568 kb on + strand, within Shewana3_2761at 3298.627 kb on + strand, within Shewana3_2761at 3298.680 kb on + strand, within Shewana3_2761

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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3,295,402 - Shewana3_2759 0.40 -0.2
3,295,485 - Shewana3_2759 0.49 +0.5
3,295,553 + Shewana3_2759 0.57 -2.0
3,295,589 + Shewana3_2759 0.61 -0.7
3,295,789 + Shewana3_2759 0.83 +1.4
3,295,858 - -1.5
3,295,889 + -0.8
3,295,892 - +2.5
3,296,005 - +0.5
3,296,005 - +2.1
3,296,923 + Shewana3_2760 0.52 -1.4
3,296,976 + Shewana3_2760 0.55 -2.0
3,297,390 + Shewana3_2760 0.80 +0.4
3,297,413 - Shewana3_2760 0.82 -1.2
3,297,680 + -1.1
3,297,716 + +1.0
3,297,957 - -0.4
3,297,983 - +0.7
3,298,003 + -1.3
3,298,031 - +0.3
3,298,153 + +0.5
3,298,241 - +0.5
3,298,441 + Shewana3_2761 0.13 -1.3
3,298,480 + Shewana3_2761 0.15 -0.8
3,298,568 + Shewana3_2761 0.19 -0.6
3,298,627 + Shewana3_2761 0.22 -0.4
3,298,680 + Shewana3_2761 0.24 +2.3

Or see this region's nucleotide sequence