Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2591 and Shewana3_2592 are separated by 374 nucleotides Shewana3_2592 and Shewana3_2593 are separated by 137 nucleotides Shewana3_2593 and Shewana3_2594 overlap by 4 nucleotides Shewana3_2594 and Shewana3_2595 are separated by 195 nucleotides
Shewana3_2590: Shewana3_2590 - hypothetical protein (RefSeq), at 3,094,805 to 3,095,473
_2590
Shewana3_2591: Shewana3_2591 - RepA domain-containing protein (RefSeq), at 3,095,460 to 3,095,801
_2591
Shewana3_2592: Shewana3_2592 - hypothetical protein (RefSeq), at 3,096,176 to 3,096,334
_2592
Shewana3_2593: Shewana3_2593 - signal transduction histidine kinase, LytS (RefSeq), at 3,096,472 to 3,098,154
_2593
Shewana3_2594: Shewana3_2594 - putative two-component response-regulatory protein YehT (RefSeq), at 3,098,151 to 3,098,861
_2594
Shewana3_2595: Shewana3_2595 - carbon starvation protein CstA (RefSeq), at 3,099,057 to 3,100,511
_2595
Position (kb)
3096
3097
3098
3099 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3095.803 kb on - strand at 3095.879 kb on + strand at 3096.172 kb on - strand at 3096.288 kb on + strand, within Shewana3_2592 at 3096.291 kb on + strand, within Shewana3_2592 at 3096.489 kb on - strand at 3096.556 kb on - strand at 3096.756 kb on - strand, within Shewana3_2593 at 3096.874 kb on - strand, within Shewana3_2593 at 3097.071 kb on - strand, within Shewana3_2593 at 3097.076 kb on + strand, within Shewana3_2593 at 3097.129 kb on + strand, within Shewana3_2593 at 3097.724 kb on - strand, within Shewana3_2593 at 3098.072 kb on + strand at 3098.403 kb on - strand, within Shewana3_2594 at 3099.074 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 3,095,803 - +1.7 3,095,879 + +0.4 3,096,172 - +1.1 3,096,288 + Shewana3_2592 0.70 -1.0 3,096,291 + Shewana3_2592 0.72 +1.1 3,096,489 - +0.6 3,096,556 - -0.9 3,096,756 - Shewana3_2593 0.17 -1.4 3,096,874 - Shewana3_2593 0.24 +1.4 3,097,071 - Shewana3_2593 0.36 -1.6 3,097,076 + Shewana3_2593 0.36 -1.8 3,097,129 + Shewana3_2593 0.39 -0.5 3,097,724 - Shewana3_2593 0.74 +0.3 3,098,072 + +2.6 3,098,403 - Shewana3_2594 0.35 -1.7 3,099,074 - -0.1
Or see this region's nucleotide sequence