Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2593

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2591 and Shewana3_2592 are separated by 374 nucleotidesShewana3_2592 and Shewana3_2593 are separated by 137 nucleotidesShewana3_2593 and Shewana3_2594 overlap by 4 nucleotidesShewana3_2594 and Shewana3_2595 are separated by 195 nucleotides Shewana3_2590: Shewana3_2590 - hypothetical protein (RefSeq), at 3,094,805 to 3,095,473 _2590 Shewana3_2591: Shewana3_2591 - RepA domain-containing protein (RefSeq), at 3,095,460 to 3,095,801 _2591 Shewana3_2592: Shewana3_2592 - hypothetical protein (RefSeq), at 3,096,176 to 3,096,334 _2592 Shewana3_2593: Shewana3_2593 - signal transduction histidine kinase, LytS (RefSeq), at 3,096,472 to 3,098,154 _2593 Shewana3_2594: Shewana3_2594 - putative two-component response-regulatory protein YehT (RefSeq), at 3,098,151 to 3,098,861 _2594 Shewana3_2595: Shewana3_2595 - carbon starvation protein CstA (RefSeq), at 3,099,057 to 3,100,511 _2595 Position (kb) 3096 3097 3098 3099Strain fitness (log2 ratio) -2 -1 0 1 2at 3095.803 kb on - strandat 3095.879 kb on + strandat 3096.172 kb on - strandat 3096.288 kb on + strand, within Shewana3_2592at 3096.291 kb on + strand, within Shewana3_2592at 3096.489 kb on - strandat 3096.556 kb on - strandat 3096.756 kb on - strand, within Shewana3_2593at 3096.874 kb on - strand, within Shewana3_2593at 3097.071 kb on - strand, within Shewana3_2593at 3097.076 kb on + strand, within Shewana3_2593at 3097.129 kb on + strand, within Shewana3_2593at 3097.724 kb on - strand, within Shewana3_2593at 3098.072 kb on + strandat 3098.403 kb on - strand, within Shewana3_2594at 3099.074 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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3,095,803 - +1.7
3,095,879 + +0.4
3,096,172 - +1.1
3,096,288 + Shewana3_2592 0.70 -1.0
3,096,291 + Shewana3_2592 0.72 +1.1
3,096,489 - +0.6
3,096,556 - -0.9
3,096,756 - Shewana3_2593 0.17 -1.4
3,096,874 - Shewana3_2593 0.24 +1.4
3,097,071 - Shewana3_2593 0.36 -1.6
3,097,076 + Shewana3_2593 0.36 -1.8
3,097,129 + Shewana3_2593 0.39 -0.5
3,097,724 - Shewana3_2593 0.74 +0.3
3,098,072 + +2.6
3,098,403 - Shewana3_2594 0.35 -1.7
3,099,074 - -0.1

Or see this region's nucleotide sequence