Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2581

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2579 and Shewana3_2580 are separated by 58 nucleotidesShewana3_2580 and Shewana3_2581 are separated by 165 nucleotidesShewana3_2581 and Shewana3_2582 are separated by 130 nucleotidesShewana3_2582 and lpxK overlap by 11 nucleotides Shewana3_2579: Shewana3_2579 - glutaredoxin (RefSeq), at 3,084,400 to 3,084,756 _2579 Shewana3_2580: Shewana3_2580 - hypothetical protein (RefSeq), at 3,084,815 to 3,085,504 _2580 Shewana3_2581: Shewana3_2581 - putative lipoprotein (RefSeq), at 3,085,670 to 3,086,134 _2581 Shewana3_2582: Shewana3_2582 - hypothetical protein (RefSeq), at 3,086,265 to 3,086,444 _2582 Shewana3_2583: lpxK - tetraacyldisaccharide 4'-kinase (RefSeq), at 3,086,434 to 3,087,441 lpxK Position (kb) 3085 3086 3087Strain fitness (log2 ratio) -2 -1 0 1at 3085.116 kb on + strand, within Shewana3_2580at 3085.244 kb on + strandat 3085.267 kb on - strand, within Shewana3_2580at 3085.363 kb on - strand, within Shewana3_2580at 3085.574 kb on - strandat 3085.664 kb on - strandat 3085.707 kb on + strandat 3085.803 kb on + strand, within Shewana3_2581at 3085.940 kb on - strand, within Shewana3_2581at 3086.128 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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3,085,116 + Shewana3_2580 0.44 -0.0
3,085,244 + -0.9
3,085,267 - Shewana3_2580 0.66 -0.9
3,085,363 - Shewana3_2580 0.79 -0.1
3,085,574 - +1.3
3,085,664 - +0.5
3,085,707 + -2.3
3,085,803 + Shewana3_2581 0.29 +1.3
3,085,940 - Shewana3_2581 0.58 +0.6
3,086,128 + -2.2

Or see this region's nucleotide sequence