Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2579 and Shewana3_2580 are separated by 58 nucleotides Shewana3_2580 and Shewana3_2581 are separated by 165 nucleotides Shewana3_2581 and Shewana3_2582 are separated by 130 nucleotides Shewana3_2582 and lpxK overlap by 11 nucleotides
Shewana3_2579: Shewana3_2579 - glutaredoxin (RefSeq), at 3,084,400 to 3,084,756
_2579
Shewana3_2580: Shewana3_2580 - hypothetical protein (RefSeq), at 3,084,815 to 3,085,504
_2580
Shewana3_2581: Shewana3_2581 - putative lipoprotein (RefSeq), at 3,085,670 to 3,086,134
_2581
Shewana3_2582: Shewana3_2582 - hypothetical protein (RefSeq), at 3,086,265 to 3,086,444
_2582
Shewana3_2583: lpxK - tetraacyldisaccharide 4'-kinase (RefSeq), at 3,086,434 to 3,087,441
lpxK
Position (kb)
3085
3086
3087 Strain fitness (log2 ratio)
-2
-1
0
1 at 3085.116 kb on + strand, within Shewana3_2580 at 3085.244 kb on + strand at 3085.267 kb on - strand, within Shewana3_2580 at 3085.363 kb on - strand, within Shewana3_2580 at 3085.574 kb on - strand at 3085.664 kb on - strand at 3085.707 kb on + strand at 3085.803 kb on + strand, within Shewana3_2581 at 3085.940 kb on - strand, within Shewana3_2581 at 3086.128 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 3,085,116 + Shewana3_2580 0.44 -0.0 3,085,244 + -0.9 3,085,267 - Shewana3_2580 0.66 -0.9 3,085,363 - Shewana3_2580 0.79 -0.1 3,085,574 - +1.3 3,085,664 - +0.5 3,085,707 + -2.3 3,085,803 + Shewana3_2581 0.29 +1.3 3,085,940 - Shewana3_2581 0.58 +0.6 3,086,128 + -2.2
Or see this region's nucleotide sequence