Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2371

Experiment: L-Threonine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2370 and Shewana3_2371 are separated by 263 nucleotidesShewana3_2371 and Shewana3_2372 are separated by 2 nucleotides Shewana3_2370: Shewana3_2370 - MltD domain-containing protein (RefSeq), at 2,848,212 to 2,849,759 _2370 Shewana3_2371: Shewana3_2371 - intracellular proteinase inhibitor domain-containing protein (RefSeq), at 2,850,023 to 2,850,682 _2371 Shewana3_2372: Shewana3_2372 - AsmA protein (RefSeq), at 2,850,685 to 2,852,505 _2372 Position (kb) 2850 2851Strain fitness (log2 ratio) -1 0 1at 2849.058 kb on - strand, within Shewana3_2370at 2849.475 kb on - strand, within Shewana3_2370at 2849.769 kb on - strandat 2849.804 kb on + strandat 2850.048 kb on - strandat 2850.202 kb on + strand, within Shewana3_2371at 2850.385 kb on + strand, within Shewana3_2371at 2850.554 kb on - strand, within Shewana3_2371at 2850.737 kb on - strandat 2850.873 kb on - strand, within Shewana3_2372at 2850.894 kb on - strand, within Shewana3_2372at 2850.948 kb on - strand, within Shewana3_2372at 2851.053 kb on + strand, within Shewana3_2372at 2851.098 kb on - strand, within Shewana3_2372at 2851.438 kb on + strand, within Shewana3_2372at 2851.486 kb on - strand, within Shewana3_2372

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
remove
2,849,058 - Shewana3_2370 0.55 -0.9
2,849,475 - Shewana3_2370 0.82 -0.8
2,849,769 - -0.2
2,849,804 + +1.2
2,850,048 - -0.0
2,850,202 + Shewana3_2371 0.27 -1.6
2,850,385 + Shewana3_2371 0.55 +0.1
2,850,554 - Shewana3_2371 0.80 -0.6
2,850,737 - -0.3
2,850,873 - Shewana3_2372 0.10 +0.8
2,850,894 - Shewana3_2372 0.11 -1.6
2,850,948 - Shewana3_2372 0.14 +0.9
2,851,053 + Shewana3_2372 0.20 -0.0
2,851,098 - Shewana3_2372 0.23 +0.3
2,851,438 + Shewana3_2372 0.41 +0.6
2,851,486 - Shewana3_2372 0.44 +1.1

Or see this region's nucleotide sequence