Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2364

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2363 and Shewana3_R0100 are separated by 282 nucleotidesShewana3_R0100 and Shewana3_R0101 are separated by 56 nucleotidesShewana3_R0101 and Shewana3_2364 are separated by 165 nucleotidesShewana3_2364 and Shewana3_2365 are separated by 358 nucleotides Shewana3_2363: Shewana3_2363 - cytochrome c552 (RefSeq), at 2,840,377 to 2,841,810 _2363 Shewana3_R0100: Shewana3_R0100 - tRNA-Asp (RefSeq), at 2,842,093 to 2,842,169 _R0100 Shewana3_R0101: Shewana3_R0101 - tRNA-Asp (RefSeq), at 2,842,226 to 2,842,302 _R0101 Shewana3_2364: Shewana3_2364 - hypothetical protein (RefSeq), at 2,842,468 to 2,843,652 _2364 Shewana3_2365: Shewana3_2365 - DNA polymerase III, epsilon subunit (RefSeq), at 2,844,011 to 2,844,739 _2365 Position (kb) 2842 2843 2844Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 2841.602 kb on + strand, within Shewana3_2363at 2841.620 kb on - strand, within Shewana3_2363at 2841.856 kb on + strandat 2842.574 kb on - strandat 2842.755 kb on + strand, within Shewana3_2364at 2842.910 kb on - strand, within Shewana3_2364at 2842.910 kb on - strand, within Shewana3_2364at 2842.925 kb on - strand, within Shewana3_2364at 2843.145 kb on - strand, within Shewana3_2364at 2843.155 kb on - strand, within Shewana3_2364at 2843.392 kb on - strand, within Shewana3_2364at 2843.462 kb on + strand, within Shewana3_2364at 2843.837 kb on + strandat 2843.837 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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2,841,602 + Shewana3_2363 0.85 +0.7
2,841,620 - Shewana3_2363 0.87 -2.0
2,841,856 + -0.5
2,842,574 - -2.0
2,842,755 + Shewana3_2364 0.24 +2.9
2,842,910 - Shewana3_2364 0.37 +5.8
2,842,910 - Shewana3_2364 0.37 +4.0
2,842,925 - Shewana3_2364 0.39 +3.3
2,843,145 - Shewana3_2364 0.57 +2.5
2,843,155 - Shewana3_2364 0.58 +7.1
2,843,392 - Shewana3_2364 0.78 +2.6
2,843,462 + Shewana3_2364 0.84 +2.8
2,843,837 + +5.7
2,843,837 + +5.5

Or see this region's nucleotide sequence