Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1842 and Shewana3_1843 are separated by 152 nucleotides Shewana3_1843 and Shewana3_1844 are separated by 24 nucleotides Shewana3_1844 and Shewana3_1845 are separated by 13 nucleotides
Shewana3_1842: Shewana3_1842 - hypothetical protein (RefSeq), at 2,182,927 to 2,183,268
_1842
Shewana3_1843: Shewana3_1843 - hypothetical protein (RefSeq), at 2,183,421 to 2,183,771
_1843
Shewana3_1844: Shewana3_1844 - hypothetical protein (RefSeq), at 2,183,796 to 2,183,996
_1844
Shewana3_1845: Shewana3_1845 - hypothetical protein (RefSeq), at 2,184,010 to 2,187,216
_1845
Position (kb) 2183
2184 Strain fitness (log2 ratio) -1
0
1
2
3 at 2183.188 kb on - strand, within Shewana3_1842 at 2183.197 kb on + strand, within Shewana3_1842 at 2183.253 kb on + strand at 2183.598 kb on - strand, within Shewana3_1843 at 2184.517 kb on + strand, within Shewana3_1845 at 2184.524 kb on + strand, within Shewana3_1845 at 2184.567 kb on - strand, within Shewana3_1845 at 2184.672 kb on + strand, within Shewana3_1845 at 2184.763 kb on + strand, within Shewana3_1845
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 2,183,188 - Shewana3_1842 0.76 -1.6 2,183,197 + Shewana3_1842 0.79 -1.7 2,183,253 + +1.4 2,183,598 - Shewana3_1843 0.50 +3.6 2,184,517 + Shewana3_1845 0.16 +2.4 2,184,524 + Shewana3_1845 0.16 -0.2 2,184,567 - Shewana3_1845 0.17 +0.1 2,184,672 + Shewana3_1845 0.21 +0.6 2,184,763 + Shewana3_1845 0.23 -1.2
Or see this region's nucleotide sequence