Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1822

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1821 and Shewana3_1822 are separated by 9 nucleotidesShewana3_1822 and Shewana3_1823 are separated by 214 nucleotides Shewana3_1821: Shewana3_1821 - hypothetical protein (RefSeq), at 2,153,023 to 2,155,062 _1821 Shewana3_1822: Shewana3_1822 - zeta toxin family protein (RefSeq), at 2,155,072 to 2,155,788 _1822 Shewana3_1823: Shewana3_1823 - hypothetical protein (RefSeq), at 2,156,003 to 2,157,856 _1823 Position (kb) 2155 2156Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2154.072 kb on + strand, within Shewana3_1821at 2154.235 kb on + strand, within Shewana3_1821at 2154.315 kb on + strand, within Shewana3_1821at 2154.448 kb on + strand, within Shewana3_1821at 2154.783 kb on + strand, within Shewana3_1821at 2154.844 kb on - strand, within Shewana3_1821at 2155.385 kb on - strand, within Shewana3_1822at 2156.381 kb on - strand, within Shewana3_1823at 2156.484 kb on + strand, within Shewana3_1823at 2156.492 kb on - strand, within Shewana3_1823at 2156.515 kb on - strand, within Shewana3_1823at 2156.754 kb on - strand, within Shewana3_1823

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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2,154,072 + Shewana3_1821 0.51 -0.2
2,154,235 + Shewana3_1821 0.59 -0.1
2,154,315 + Shewana3_1821 0.63 -3.1
2,154,448 + Shewana3_1821 0.70 -1.8
2,154,783 + Shewana3_1821 0.86 +0.8
2,154,844 - Shewana3_1821 0.89 -1.4
2,155,385 - Shewana3_1822 0.44 +0.0
2,156,381 - Shewana3_1823 0.20 -0.2
2,156,484 + Shewana3_1823 0.26 +1.6
2,156,492 - Shewana3_1823 0.26 +0.0
2,156,515 - Shewana3_1823 0.28 +0.8
2,156,754 - Shewana3_1823 0.41 +2.1

Or see this region's nucleotide sequence