Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1361

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliA and Shewana3_1360 are separated by 47 nucleotidesShewana3_1360 and Shewana3_1361 are separated by 13 nucleotidesShewana3_1361 and Shewana3_1362 are separated by 15 nucleotides Shewana3_1359: fliA - flagellar biosynthesis sigma factor (RefSeq), at 1,572,224 to 1,572,937 fliA Shewana3_1360: Shewana3_1360 - response regulator receiver protein (RefSeq), at 1,572,985 to 1,573,368 _1360 Shewana3_1361: Shewana3_1361 - chemotaxis phosphatase, CheZ (RefSeq), at 1,573,382 to 1,574,119 _1361 Shewana3_1362: Shewana3_1362 - CheA signal transduction histidine kinases (RefSeq), at 1,574,135 to 1,576,423 _1362 Position (kb) 1573 1574 1575Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 1572.524 kb on + strand, within fliAat 1572.806 kb on + strand, within fliAat 1572.907 kb on + strandat 1573.403 kb on - strandat 1574.551 kb on - strandat 1574.572 kb on + strand, within Shewana3_1362at 1574.578 kb on + strand, within Shewana3_1362

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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1,572,524 + fliA Shewana3_1359 0.42 +5.2
1,572,806 + fliA Shewana3_1359 0.82 +7.7
1,572,907 + -0.0
1,573,403 - +1.4
1,574,551 - -0.0
1,574,572 + Shewana3_1362 0.19 +0.8
1,574,578 + Shewana3_1362 0.19 +0.7

Or see this region's nucleotide sequence