Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1232

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisS and Shewana3_1231 are separated by 12 nucleotidesShewana3_1231 and Shewana3_1232 are separated by 11 nucleotidesShewana3_1232 and engA are separated by 79 nucleotides Shewana3_1230: hisS - histidyl-tRNA synthetase (RefSeq), at 1,433,833 to 1,435,110 hisS Shewana3_1231: Shewana3_1231 - hypothetical protein (RefSeq), at 1,435,123 to 1,435,743 _1231 Shewana3_1232: Shewana3_1232 - outer membrane protein assembly complex subunit YfgL (RefSeq), at 1,435,755 to 1,436,942 _1232 Shewana3_1233: engA - GTP-binding protein EngA (RefSeq), at 1,437,022 to 1,438,488 engA Position (kb) 1435 1436 1437Strain fitness (log2 ratio) -1 0 1 2at 1435.486 kb on + strand, within Shewana3_1231at 1435.486 kb on + strand, within Shewana3_1231at 1435.521 kb on + strand, within Shewana3_1231at 1436.925 kb on + strandat 1436.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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1,435,486 + Shewana3_1231 0.58 +1.2
1,435,486 + Shewana3_1231 0.58 +2.5
1,435,521 + Shewana3_1231 0.64 +2.2
1,436,925 + +1.1
1,436,934 - +0.2

Or see this region's nucleotide sequence