Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0733

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0732 and Shewana3_0733 are separated by 171 nucleotidesShewana3_0733 and Shewana3_0734 are separated by 430 nucleotides Shewana3_0732: Shewana3_0732 - DNA topoisomerase IV subunit A (RefSeq), at 848,757 to 851,033 _0732 Shewana3_0733: Shewana3_0733 - porin (RefSeq), at 851,205 to 852,284 _0733 Shewana3_0734: Shewana3_0734 - porin (RefSeq), at 852,715 to 853,779 _0734 Position (kb) 851 852 853Strain fitness (log2 ratio) -1 0 1 2 3at 851.226 kb on - strandat 851.460 kb on + strandat 851.548 kb on + strand, within Shewana3_0733at 851.616 kb on - strand, within Shewana3_0733at 851.668 kb on - strand, within Shewana3_0733at 851.891 kb on + strand, within Shewana3_0733at 852.153 kb on + strand, within Shewana3_0733at 852.237 kb on - strandat 852.400 kb on - strandat 852.435 kb on + strandat 852.588 kb on + strandat 852.862 kb on - strand, within Shewana3_0734at 852.912 kb on - strand, within Shewana3_0734at 852.967 kb on - strand, within Shewana3_0734at 853.112 kb on - strand, within Shewana3_0734

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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851,226 - +1.5
851,460 + +0.8
851,548 + Shewana3_0733 0.32 -1.1
851,616 - Shewana3_0733 0.38 +2.4
851,668 - Shewana3_0733 0.43 +1.1
851,891 + Shewana3_0733 0.64 -1.6
852,153 + Shewana3_0733 0.88 +0.8
852,237 - +3.2
852,400 - -0.5
852,435 + +0.2
852,588 + +0.1
852,862 - Shewana3_0734 0.14 +0.4
852,912 - Shewana3_0734 0.18 +0.5
852,967 - Shewana3_0734 0.24 +0.8
853,112 - Shewana3_0734 0.37 +0.2

Or see this region's nucleotide sequence