Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tolC and Shewana3_0726 are separated by 243 nucleotides Shewana3_0726 and Shewana3_0727 overlap by 8 nucleotides Shewana3_0727 and Shewana3_0728 are separated by 15 nucleotides Shewana3_0728 and Shewana3_0729 are separated by 26 nucleotides
Shewana3_0725: tolC - outer membrane channel protein (RefSeq), at 841,529 to 842,836
tolC
Shewana3_0726: Shewana3_0726 - nucleoside diphosphate pyrophosphatase (RefSeq), at 843,080 to 843,691
_0726
Shewana3_0727: Shewana3_0727 - hypothetical protein (RefSeq), at 843,684 to 844,136
_0727
Shewana3_0728: Shewana3_0728 - calcineurin phosphoesterase C-terminal domain-containing protein (RefSeq), at 844,152 to 844,991
_0728
Shewana3_0729: Shewana3_0729 - hypothetical protein (RefSeq), at 845,018 to 845,593
_0729
Position (kb) 843
844
845 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 842.740 kb on - strand at 842.960 kb on - strand at 842.984 kb on + strand at 843.003 kb on + strand at 843.248 kb on + strand, within Shewana3_0726 at 843.401 kb on + strand, within Shewana3_0726 at 843.462 kb on + strand, within Shewana3_0726 at 843.470 kb on - strand, within Shewana3_0726 at 843.484 kb on + strand, within Shewana3_0726 at 843.501 kb on - strand, within Shewana3_0726 at 843.510 kb on + strand, within Shewana3_0726 at 843.572 kb on + strand, within Shewana3_0726 at 843.580 kb on - strand, within Shewana3_0726 at 843.761 kb on + strand, within Shewana3_0727 at 843.791 kb on - strand, within Shewana3_0727 at 843.805 kb on + strand, within Shewana3_0727 at 843.821 kb on + strand, within Shewana3_0727 at 843.830 kb on + strand, within Shewana3_0727 at 843.937 kb on + strand, within Shewana3_0727 at 844.020 kb on + strand, within Shewana3_0727 at 844.020 kb on + strand, within Shewana3_0727 at 844.020 kb on + strand, within Shewana3_0727 at 844.020 kb on + strand, within Shewana3_0727 at 844.020 kb on + strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.028 kb on - strand, within Shewana3_0727 at 844.078 kb on - strand, within Shewana3_0727 at 844.532 kb on + strand, within Shewana3_0728 at 844.598 kb on + strand, within Shewana3_0728 at 844.598 kb on + strand, within Shewana3_0728 at 844.606 kb on - strand, within Shewana3_0728 at 844.606 kb on - strand, within Shewana3_0728 at 844.648 kb on + strand, within Shewana3_0728 at 844.685 kb on - strand, within Shewana3_0728 at 844.744 kb on - strand, within Shewana3_0728 at 844.749 kb on + strand, within Shewana3_0728 at 844.751 kb on - strand, within Shewana3_0728 at 844.756 kb on - strand, within Shewana3_0728 at 844.927 kb on + strand at 845.023 kb on + strand at 845.083 kb on + strand, within Shewana3_0729 at 845.091 kb on - strand, within Shewana3_0729 at 845.091 kb on - strand, within Shewana3_0729
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 842,740 - -0.0 842,960 - +0.6 842,984 + +0.9 843,003 + -0.6 843,248 + Shewana3_0726 0.27 +0.4 843,401 + Shewana3_0726 0.52 +0.6 843,462 + Shewana3_0726 0.62 -1.5 843,470 - Shewana3_0726 0.64 +1.0 843,484 + Shewana3_0726 0.66 +0.4 843,501 - Shewana3_0726 0.69 +0.3 843,510 + Shewana3_0726 0.70 +1.2 843,572 + Shewana3_0726 0.80 -0.8 843,580 - Shewana3_0726 0.82 -1.5 843,761 + Shewana3_0727 0.17 -1.5 843,791 - Shewana3_0727 0.24 +0.8 843,805 + Shewana3_0727 0.27 -1.0 843,821 + Shewana3_0727 0.30 -1.1 843,830 + Shewana3_0727 0.32 +0.0 843,937 + Shewana3_0727 0.56 -1.6 844,020 + Shewana3_0727 0.74 +1.2 844,020 + Shewana3_0727 0.74 -2.8 844,020 + Shewana3_0727 0.74 -0.3 844,020 + Shewana3_0727 0.74 -1.5 844,020 + Shewana3_0727 0.74 -3.3 844,028 - Shewana3_0727 0.76 -3.0 844,028 - Shewana3_0727 0.76 -3.1 844,028 - Shewana3_0727 0.76 -2.1 844,028 - Shewana3_0727 0.76 -4.1 844,028 - Shewana3_0727 0.76 -1.7 844,028 - Shewana3_0727 0.76 -1.8 844,028 - Shewana3_0727 0.76 -2.1 844,028 - Shewana3_0727 0.76 -2.6 844,078 - Shewana3_0727 0.87 -3.5 844,532 + Shewana3_0728 0.45 -3.3 844,598 + Shewana3_0728 0.53 -4.0 844,598 + Shewana3_0728 0.53 -2.9 844,606 - Shewana3_0728 0.54 -4.4 844,606 - Shewana3_0728 0.54 -3.7 844,648 + Shewana3_0728 0.59 -3.1 844,685 - Shewana3_0728 0.63 -2.5 844,744 - Shewana3_0728 0.70 -4.3 844,749 + Shewana3_0728 0.71 -2.0 844,751 - Shewana3_0728 0.71 -1.6 844,756 - Shewana3_0728 0.72 -3.7 844,927 + -4.3 845,023 + -0.6 845,083 + Shewana3_0729 0.11 +0.7 845,091 - Shewana3_0729 0.13 -0.4 845,091 - Shewana3_0729 0.13 +2.7
Or see this region's nucleotide sequence