Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0677 and Shewana3_0678 are separated by 562 nucleotides Shewana3_0678 and Shewana3_0679 overlap by 4 nucleotides Shewana3_0679 and Shewana3_0680 are separated by 54 nucleotides
Shewana3_0677: Shewana3_0677 - KpsF/GutQ family protein (RefSeq), at 795,919 to 796,896
_0677
Shewana3_0678: Shewana3_0678 - ABC transporter related (RefSeq), at 797,459 to 798,277
_0678
Shewana3_0679: Shewana3_0679 - hypothetical protein (RefSeq), at 798,274 to 799,059
_0679
Shewana3_0680: Shewana3_0680 - hypothetical protein (RefSeq), at 799,114 to 799,587
_0680
Position (kb) 797
798
799 Strain fitness (log2 ratio) -2
-1
0
1
2 at 796.987 kb on - strand at 797.034 kb on - strand at 797.366 kb on - strand at 797.409 kb on + strand at 797.651 kb on + strand, within Shewana3_0678 at 797.664 kb on + strand, within Shewana3_0678 at 797.778 kb on + strand, within Shewana3_0678 at 798.117 kb on + strand, within Shewana3_0678 at 798.188 kb on + strand, within Shewana3_0678 at 798.207 kb on + strand at 798.207 kb on + strand at 798.248 kb on + strand at 798.521 kb on + strand, within Shewana3_0679 at 798.550 kb on + strand, within Shewana3_0679 at 798.727 kb on + strand, within Shewana3_0679 at 798.925 kb on + strand, within Shewana3_0679 at 798.938 kb on + strand, within Shewana3_0679 at 798.973 kb on + strand, within Shewana3_0679 at 798.983 kb on + strand at 799.210 kb on + strand, within Shewana3_0680 at 799.229 kb on + strand, within Shewana3_0680
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 796,987 - -1.6 797,034 - +1.3 797,366 - +0.2 797,409 + +0.5 797,651 + Shewana3_0678 0.23 -0.4 797,664 + Shewana3_0678 0.25 +1.7 797,778 + Shewana3_0678 0.39 -0.7 798,117 + Shewana3_0678 0.80 +1.3 798,188 + Shewana3_0678 0.89 -1.8 798,207 + -0.0 798,207 + -0.8 798,248 + +1.0 798,521 + Shewana3_0679 0.31 +1.9 798,550 + Shewana3_0679 0.35 +2.7 798,727 + Shewana3_0679 0.58 +0.3 798,925 + Shewana3_0679 0.83 +1.6 798,938 + Shewana3_0679 0.84 +0.3 798,973 + Shewana3_0679 0.89 -0.4 798,983 + +2.1 799,210 + Shewana3_0680 0.20 +0.5 799,229 + Shewana3_0680 0.24 +1.9
Or see this region's nucleotide sequence