Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0552 and Shewana3_0553 are separated by 272 nucleotides Shewana3_0553 and Shewana3_0554 are separated by 15 nucleotides Shewana3_0554 and Shewana3_0555 are separated by 138 nucleotides Shewana3_0555 and Shewana3_0556 are separated by 48 nucleotides
Shewana3_0552: Shewana3_0552 - hypothetical protein (RefSeq), at 645,579 to 645,887
_0552
Shewana3_0553: Shewana3_0553 - hypothetical protein (RefSeq), at 646,160 to 646,684
_0553
Shewana3_0554: Shewana3_0554 - diguanylate cyclase/phosphodiesterase (RefSeq), at 646,700 to 648,454
_0554
Shewana3_0555: Shewana3_0555 - hypothetical protein (RefSeq), at 648,593 to 648,901
_0555
Shewana3_0556: Shewana3_0556 - GumN family protein (RefSeq), at 648,950 to 649,846
_0556
Position (kb) 646
647
648
649 Strain fitness (log2 ratio) -1
0
1
2 at 645.707 kb on + strand, within Shewana3_0552 at 645.707 kb on + strand, within Shewana3_0552 at 645.715 kb on - strand, within Shewana3_0552 at 646.198 kb on - strand at 646.203 kb on + strand at 646.508 kb on + strand, within Shewana3_0553 at 646.935 kb on - strand, within Shewana3_0554 at 647.190 kb on + strand, within Shewana3_0554 at 647.742 kb on - strand, within Shewana3_0554 at 647.768 kb on + strand, within Shewana3_0554 at 648.138 kb on - strand, within Shewana3_0554 at 648.156 kb on - strand, within Shewana3_0554 at 648.282 kb on + strand at 648.290 kb on - strand at 648.325 kb on - strand at 648.340 kb on + strand at 648.425 kb on - strand at 648.477 kb on - strand at 648.654 kb on - strand, within Shewana3_0555 at 648.678 kb on - strand, within Shewana3_0555 at 648.678 kb on - strand, within Shewana3_0555 at 648.761 kb on - strand, within Shewana3_0555 at 648.763 kb on + strand, within Shewana3_0555 at 648.893 kb on - strand at 648.893 kb on - strand at 648.893 kb on - strand at 648.893 kb on - strand at 648.938 kb on - strand at 649.015 kb on + strand at 649.053 kb on - strand, within Shewana3_0556 at 649.172 kb on - strand, within Shewana3_0556 at 649.308 kb on + strand, within Shewana3_0556 at 649.328 kb on + strand, within Shewana3_0556 at 649.423 kb on - strand, within Shewana3_0556 at 649.438 kb on + strand, within Shewana3_0556
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 645,707 + Shewana3_0552 0.41 +2.1 645,707 + Shewana3_0552 0.41 -0.9 645,715 - Shewana3_0552 0.44 +1.8 646,198 - +0.5 646,203 + +0.5 646,508 + Shewana3_0553 0.66 -1.5 646,935 - Shewana3_0554 0.13 -0.7 647,190 + Shewana3_0554 0.28 +2.3 647,742 - Shewana3_0554 0.59 +1.2 647,768 + Shewana3_0554 0.61 +0.1 648,138 - Shewana3_0554 0.82 +0.4 648,156 - Shewana3_0554 0.83 +0.2 648,282 + -1.3 648,290 - +2.5 648,325 - -1.2 648,340 + -0.6 648,425 - -1.6 648,477 - +0.7 648,654 - Shewana3_0555 0.20 -1.2 648,678 - Shewana3_0555 0.28 +0.4 648,678 - Shewana3_0555 0.28 +0.7 648,761 - Shewana3_0555 0.54 -0.9 648,763 + Shewana3_0555 0.55 +0.6 648,893 - -0.2 648,893 - -1.2 648,893 - +2.1 648,893 - -0.5 648,938 - +0.7 649,015 + -1.0 649,053 - Shewana3_0556 0.11 +2.2 649,172 - Shewana3_0556 0.25 +0.2 649,308 + Shewana3_0556 0.40 +0.4 649,328 + Shewana3_0556 0.42 -0.4 649,423 - Shewana3_0556 0.53 -1.7 649,438 + Shewana3_0556 0.54 +0.4
Or see this region's nucleotide sequence